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Computational phantoms are widely used in medical imaging research, yet current systems to generate controlled, clinically meaningful anatomical variations remain limited. We present AbdomenGen, a sequential volume-conditioned diffusion…

Computer Vision and Pattern Recognition · Computer Science 2026-04-15 Yubraj Bhandari , Lavsen Dahal , Paul Segars , Joseph Y. Lo

We present here a new stochastic modelling in the constitution of fluid flow reduced-order models. This framework introduces a spatially inhomogeneous random field to represent the unresolved small-scale velocity component. Such a…

Fluid Dynamics · Physics 2017-09-20 Valentin Resseguier , Etienne Mémin , Dominique Heitz , Bertrand Chapron

In this paper, we present a framework for multiscale topology optimization of fluid-flow devices. The objective is to minimize dissipated power, subject to a desired contact-area. The proposed strategy is to design optimal microstructures…

Computational Engineering, Finance, and Science · Computer Science 2023-09-18 Rahul Kumar Padhy , Krishnan Suresh , Aaditya Chandrasekhar

In this paper, a novel framework for automated liver segmentation via a level set formulation is presented. A sparse representation of both global (region-based) and local (voxel-wise) image information is embedded in a level set…

Computer Vision and Pattern Recognition · Computer Science 2015-10-06 Saif Dawood Salman Al-Shaikhli , Michael Ying Yang , Bodo Rosenhahn

Accurate modeling of polycrystalline microstructure evolution under strong crystallographic heterogeneities remains a major challenge for full-field numerical methods at the mesoscopic scale. In this work, we present a high-fidelity…

Materials Science · Physics 2026-03-13 Tianchi Li , Marc Bernacki

Diffusion models are a special type of generative model, capable of synthesising new data from a learnt distribution. We introduce DISPR, a diffusion-based model for solving the inverse problem of three-dimensional (3D) cell shape…

Computer Vision and Pattern Recognition · Computer Science 2023-03-15 Dominik J. E. Waibel , Ernst Röell , Bastian Rieck , Raja Giryes , Carsten Marr

We study a continuum model of the lipid bilayer based on minimizing the free energy of a mixture of water and lipid molecules. This paper extends previous work by Blom & Peletier (2004) in the following ways. (a) It formulates a more…

Soft Condensed Matter · Physics 2020-06-05 Phillip L. Wilson , Huaxiong Huang , Shu Takagi

In this paper we introduce a mesoscale continuum model for membranes made of two different types of amphiphilic lipids. The model extends work by Peletier and the second author [Arch. Ration. Mech. Anal. 193, 2009] for the one-phase case.…

Analysis of PDEs · Mathematics 2024-03-25 Jakob Fuchs , Matthias Röger

This paper presents a phase-field model for simulating the three-dimensional deformation of vesicle membranes, incorporating area-difference elasticity, with constraints on bulk volume and surface area. We develop efficient numerical…

Numerical Analysis · Mathematics 2025-11-19 Yihong Liang , Emine Celiker , Ping Lin

We present a multi-phase-field model to describe quantitatively nanowire growth by the vapor-liquid-solid (VLS) process. The free-energy functional of this model depends on three non-conserved order parameters that distinguish the vapor,…

Materials Science · Physics 2018-03-21 Nan Wang , Moneesh Upmanyu , Alain Karma

The UK Biobank Imaging Study has acquired medical scans of more than 40,000 volunteer participants. The resulting wealth of anatomical information has been made available for research, together with extensive metadata including measurements…

Image and Video Processing · Electrical Eng. & Systems 2020-07-02 Taro Langner , Robin Strand , Håkan Ahlström , Joel Kullberg

We present a novel mathematical model that simulates myocardial blood perfusion by embedding multiscale and multiphysics features. Our model incorporates cardiac electrophysiology, active and passive mechanics, hemodynamics, reduced valve…

Computational Engineering, Finance, and Science · Computer Science 2023-03-27 Alberto Zingaro , Christian Vergara , Luca Dede' , Francesco Regazzoni , Alfio Quarteroni

In this paper, we propose a multi-layered hyperelastic plate theory of growth within the framework of nonlinear elasticity. First, the 3D governing system for a general multi-layered hyperelastic plate is established, which incorporates the…

Materials Science · Physics 2022-07-05 Ping Du , Zhanfeng Li , Xiaoyi Chen , Jiong Wang

Graphical model estimation from multi-omics data requires a balance between statistical estimation performance and computational scalability. We introduce a novel pseudolikelihood-based graphical model framework that reparameterizes the…

Machine Learning · Statistics 2025-09-23 Sungdong Lee , Joshua Bang , Youngrae Kim , Hyungwon Choi , Sang-Yun Oh , Joong-Ho Won

A systematic understanding of the evolution and growth dynamics of invasive solid tumors in response to different chemotherapy strategies is crucial for the development of individually optimized oncotherapy. Here, we develop a hybrid…

Tissues and Organs · Quantitative Biology 2020-07-01 Hang Xie , Yang Jiao , Qihui Fan , Miaomiao Hai , Jiaen Yang , Zhijian Hu , Yue Yang , Jianwei Shuai , Guo Chen , Ruchuan Liu , Liyu Liu

Multi-component fluid flow simulations in multi-scale porous structures often involve regions that are under-resolved at practical computational resolutions. Accurately capturing the contributions from these unresolved regions is critical.…

The success of embolisation, a minimally invasive treatment of liver cancer, could be evaluated in the operational room with cone-beam CT by acquiring a dynamic perfusion scan. The reconstruction algorithm must address the issues of low…

The way living tissues respond to external mechanical forces is crucial in physiological processes like embryogenesis, homeostasis or tumor growth. Providing a complete description across length scales which relates the properties of…

Soft Condensed Matter · Physics 2025-11-07 Majid Layachi , Remi Merindol , Laura Casanellas

Tubular tree structures such as blood vessels and lung airways are central to many clinical tasks, including diagnosis, treatment planning, and surgical navigation. Accurate centerline extraction with correct topology is essential, as…

Computer Vision and Pattern Recognition · Computer Science 2026-03-13 Roman Naeem , David Hagerman , Jennifer Alvén , Fredrik Kahl

We present a mathematical model that describes how tumour heterogeneity evolves in a tissue slice that is oxygenated by a single blood vessel. Phenotype is identified with the stemness level of a cell, $s$, that determines its proliferative…

Cell Behavior · Quantitative Biology 2023-11-14 Giulia L. Celora , Helen M. Byrne , P. G. Kevrekidis