Related papers: On maximal almost balanced non-overlapping codes a…
Non-overlapping codes are block codes that have arisen in diverse contexts of computer science and biology. Applications typically require finding non-overlapping codes with large cardinalities, but the maximum size of non-overlapping codes…
Consider a $q$-ary block code satisfying the property that no $l$-letters long codeword's prefix occurs as a suffix of any codeword for $l$ inside some interval. We determine a general upper bound on the maximum size of these codes and a…
Non-overlapping codes are a set of codewords such that the prefix of each codeword is not a suffix of any codeword in the set, including itself. If the lengths of the codewords are variable, it is additionally required that every codeword…
Non-overlapping codes have been studied for almost 60 years. In such a code, no proper, non-empty prefix of any codeword is a suffix of any codeword. In this paper, we study codes in which overlaps of certain specified sizes are forbidden.…
We examine and compare several different classes of "balanced" block codes over q-ary alphabets, namely symbol-balanced (SB) codes, charge-balanced (CB) codes, and polarity-balanced (PB) codes. Known results on the maximum size and…
We describe properties and constructions of constraint-based codes for DNA-based data storage which account for the maximum repetition length and AT/GC balance. We present algorithms for computing the number of sequences with maximum…
We study the amount of reliable information that can be stored in a DNA-based storage system with noisy sequencing, where each codeword is composed of short DNA molecules. We analyze a concatenated coding scheme, where the outer code is…
We establish a general formula for the maximum size of finite length block codes with minimum pairwise distance no less than $d$. The achievability argument involves an iterative construction of a set of radius-$d$ balls, each centered at a…
This paper introduces a new family of reconstruction codes which is motivated by applications in DNA data storage and sequencing. In such applications, DNA strands are sequenced by reading some subset of their substrings. While previous…
We prove that, for all binary-input symmetric memoryless channels, polar codes enable reliable communication at rates within $\epsilon > 0$ of the Shannon capacity with a block length, construction complexity, and decoding complexity all…
Improved bounds on the blocklength required to communicate over binary-input channels using polar codes, below some given error probability, are derived. For that purpose, an improved bound on the number of non-polarizing channels is…
Composite DNA is a recent novel method to increase the information capacity of DNA-based data storage above the theoretical limit of 2 bits/symbol. In this method, every composite symbol does not store a single DNA nucleotide but a mixture…
In this work, we study two types of constraints on two-dimensional binary arrays. In particular, given $p,\epsilon>0$, we study (i) The $p$-bounded constraint: a binary vector of size $m$ is said to be $p$-bounded if its weight is at most…
DNA storage has emerged as an important area of research. The reliability of DNA storage system depends on designing the DNA strings (called DNA codes) that are sufficiently dissimilar. In this work, we introduce DNA codes that satisfy a…
The design of codes for feedback-enabled communications has been a long-standing open problem. Recent research on non-linear, deep learning-based coding schemes have demonstrated significant improvements in communication reliability over…
We define a variable-length code having the property that no (non-empty) prefix of each its codeword is a suffix of any other one, and vice versa. This kind of code can be seen as an extension of two well-known codes in literature, called…
We discuss inequalities holding between the vocabulary size, i.e., the number of distinct nonterminal symbols in a grammar-based compression for a string, and the excess length of the respective universal code, i.e., the code-based analog…
Ternary channels can be used to model the behavior of some memory devices, where information is stored in three different levels. In this paper, error correcting coding for a ternary channel where some of the error transitions are not…
Let $W$ be a binary-input memoryless symmetric (BMS) channel with Shannon capacity $I(W)$ and fix any $\alpha > 0$. We construct, for any sufficiently small $\delta > 0$, binary linear codes of block length $O(1/\delta^{2+\alpha})$ and rate…
We describe a novel extension of subspace codes for noncoherent networks, suitable for use when the network is viewed as a communication system that introduces both dimension and symbol errors. We show that when symbol erasures occur in a…