English
Related papers

Related papers: A kinetic derivation of spatial distributed models…

200 papers

Spatial agent-based models are increasingly used to investigate the evolution of solid tumours subject to localised cell-cell interactions and microenvironmental heterogeneity. Here we present a non-technical step by step guide to…

Quantitative Methods · Quantitative Biology 2023-11-08 Blair Colyer , Maciej Bak , David Basanta , Robert Noble

It is a well-established fact that tumors up-regulate glucose consumption to meet increasing demands for rapidly available energy by switching to purely glycolytic mode of glucose metabolism. What is often neglected is that cytotoxic cells…

Tissues and Organs · Quantitative Biology 2014-07-31 Irina Kareva

A mathematical model for time development of metastases and their distribution in size and carrying capacity is presented. The model is used to theoretically investigate anti-cancer therapies such as surgery and chemical treatments…

Tissues and Organs · Quantitative Biology 2013-06-21 Sebastien Benzekry , Dominique Barbolosi , Assia Benabdallah , Florence Hubert , Philip Hahnfeldt

We study the effect of intratumor heterogeneity in the likelihood of cancer cells moving from a primary tumor to other sites in the human body, generating a metastatic process. We model different scenarios of competition between tumor cells…

Populations and Evolution · Quantitative Biology 2025-10-28 André Rocha , Claudia Manini , José I López , Annick Laruelle

Capturing the structure of a data-generating process by means of appropriate inductive biases can help in learning models that generalize well and are robust to changes in the input distribution. While methods that harness spatial and…

In this paper we develop mathematical models for collective cell motility. Initially we develop a model using a linear diffusion-advection type equation and fit the parameters to data from cell motility assays. This approach is helpful in…

Cell Behavior · Quantitative Biology 2012-03-23 Jason M. Graham , Bruce P. Ayati

Information transfer is an essential factor in determining the robustness of collective behaviour in biological systems with distributed control. The most direct way to study the information transfer mechanisms is to experimentally detect…

Statistical Mechanics · Physics 2016-12-21 Andrea Cavagna , Daniele Conti , Irene Giardina , Tomas S. Grigera , Stefania Melillo , Massimiliano Viale

In this paper, we develop a sharp interface tumor growth model to study the effect of the tumor microenvironment using a complex far-field geometry that mimics a heterogeneous distribution of vasculature. Together with different nutrient…

Numerical Analysis · Mathematics 2020-03-20 Min-Jhe Lu , Chun Liu , John Lowengrub , Shuwang Li

We introduce here a new diffuse interface thermodynamically consistent non-isothermal model for tumor growth in presence of a nutrient in a domain $\Omega \subset \mathbb{R}^3$. In particular our system describes the growth of a tumor…

Analysis of PDEs · Mathematics 2022-12-19 Erica Ipocoana

In a living system composed of interacting components such as molecules, cells, and tissues, each component often adaptively changes its internal states in response to interactions with its surrounding components. For example, individual…

Biological Physics · Physics 2025-10-28 Ryunosuke Suzuki , Taiji Adachi

In this work we numerically study the diffusive limit of run & tumble kinetic models for cell motion due to chemotaxis by means of asymptotic preserving schemes. It is well-known that the diffusive limit of these models leads to the…

Numerical Analysis · Mathematics 2011-10-18 Jose A. Carrillo , Bokai Yan

Aberrantly regulated cell motility is a hallmark of cancer cells. A hybrid agent-based model has been developed to investigate the synergistic and antagonistic cell motility-impacting effects of three microenvironment variables…

Cell Behavior · Quantitative Biology 2008-06-26 L. Leon Chen , Le Zhang , Jeongah Yoon , Thomas S. Deisboeck

Starting from a particle model describing self-propelled particles interacting through nematic alignment, we derive a macroscopic model for the particle density and mean direction of motion. We first propose a mean-field kinetic model of…

Mathematical Physics · Physics 2019-10-08 Pierre Degond , Sara Merino-Aceituno

During the last decades, medical observations and multiscale data concerning tumor growth are mounting. At the same time, contemporary imaging techniques well established in clinical practice, provide a variety of information on real-time,…

Tissues and Organs · Quantitative Biology 2017-12-11 Markos Antonopoulos , Georgios Stamatakos

This paper deals with the micro-macro derivation of virus models coupled with a reaction diffusion models that generates the dynamics in space of the virus particles. The first part of the presentation focuses, starting from [5, 6] on a…

Dynamical Systems · Mathematics 2021-12-15 Diletta Burini , Nadia Chouhad

Kinetic theory frameworks are widely used for modeling stochastic interacting systems, where the evolution primarily depends on binary interactions. Recently, in this framework the action of the external force field has been introduction in…

Populations and Evolution · Quantitative Biology 2025-12-30 Marco Menale , Carmelo Filippo Munafò , Francesco Oliveri

Adaptive therapy is a promising paradigm for treating cancers, that exploits competitive interactions between drug-sensitive and drug-resistant cells, thereby avoiding or delaying treatment failure due to evolution of drug resistance within…

Populations and Evolution · Quantitative Biology 2024-09-12 Yuri G. Vilela , Artur C. Fassoni , Armando G. M. Neves

In this paper, we study a cancer invasion model both theoretically and numerically. The model is a nonstationary, nonlinear system of three coupled partial differential equations modeling the motion of cancer cells, degradation of the…

Numerical Analysis · Mathematics 2023-08-02 Mario Fuest , Shahin Heydari , Petr Knobloch , Johannes Lankeit , Thomas Wick

Cell competition is recognized to be instrumental to the dynamics and structure of the tumor-host interface in invasive cancers. In mild competition scenarios, the healthy tissue and cancer cells can coexist. When the competition is…

Populations and Evolution · Quantitative Biology 2022-04-19 Heyrim Cho , Doron Levy

A spatiotemporal noise is assumed to reflect the environmental fluctuation in a spatially extended tumor system. We introduce firstly the structure factor to reveal the invasive tumor growth quantitatively. The homogenous environment can…

Other Quantitative Biology · Quantitative Biology 2009-11-13 Wei-Rong Zhong , Yuan-Zhi Shao , Li Li , Feng-Hua Wang , Zhen-Hui He