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Clustering plays a crucial role in computer science, facilitating data analysis and problem-solving across numerous fields. By partitioning large datasets into meaningful groups, clustering reveals hidden structures and relationships within…

Databases · Computer Science 2026-02-19 Aryan Esmailpour , Stavros Sintos

This note is the third part of our work devoted to uniqueness sets for spaces of entire functions. Given a discrete set $\Lambda$ with angular density $\Delta$ with respect to the order $\rho$, satisfying some regularity condition, we show…

Complex Variables · Mathematics 2026-05-21 Anna Kononova

Counting the frequencies of k-mers in read libraries is often a first step in the analysis of high-throughput sequencing experiments. Infrequent k-mers are assumed to be a result of sequencing errors. The frequent k-mers constitute a…

Genomics · Quantitative Biology 2013-05-09 Rajat Shuvro Roy , Debashish Bhattacharya , Alexander Schliep

Given a string $\sigma$ over alphabet $\Sigma$ and a grammar $G$ defined over the same alphabet, how many minimum number of repairs: insertions, deletions and substitutions are required to map $\sigma$ into a valid member of $G$ ? We…

Data Structures and Algorithms · Computer Science 2013-11-13 Barna Saha

Minimum sum-of-squares clustering (MSSC) is a widely used clustering model, of which the popular K-means algorithm constitutes a local minimizer. It is well known that the solutions of K-means can be arbitrarily distant from the true MSSC…

Machine Learning · Computer Science 2018-12-21 Daniel Gribel , Thibaut Vidal

Let $S$ be a string of length $n$. In this paper we introduce the notion of \emph{string attractor}: a subset of the string's positions $[1,n]$ such that every distinct substring of $S$ has an occurrence crossing one of the attractor's…

Data Structures and Algorithms · Computer Science 2017-09-20 Nicola Prezza

For a well-studied family of domination-type problems, in bounded-treewidth graphs, we investigate whether it is possible to find faster algorithms. For sets $\sigma,\rho$ of non-negative integers, a $(\sigma,\rho)$-set of a graph $G$ is a…

Computational Complexity · Computer Science 2023-06-07 Jacob Focke , Dániel Marx , Fionn Mc Inerney , Daniel Neuen , Govind S. Sankar , Philipp Schepper , Philip Wellnitz

We present a local density estimator based on first order statistics. To estimate the density at a point, $x$, the original sample is divided into subsets and the average minimum sample distance to $x$ over all such subsets is used to…

Methodology · Statistics 2014-12-10 Vikram V. Garg , Luis Tenorio , Karen Willcox

We study the parameterized complexity of domination-type problems. (sigma,rho)-domination is a general and unifying framework introduced by Telle: a set D of vertices of a graph G is (sigma,rho)-dominating if for any v in D, |N(v)\cap D| in…

Computational Complexity · Computer Science 2015-01-15 David Cattanéo , Simon Perdrix

We study the streaming complexity of $k$-counter approximate counting. In the $k$-counter approximate counting problem, we are given an input string in $[k]^n$, and we are required to approximate the number of each $j$'s ($j\in[k]$) in the…

Data Structures and Algorithms · Computer Science 2024-06-19 Yichuan Wang

Curve samplers are sampling algorithms that proceed by viewing the domain as a vector space over a finite field, and randomly picking a low-degree curve in it as the sample. Curve samplers exhibit a nice property besides the sampling…

Computational Complexity · Computer Science 2013-09-05 Zeyu Guo

A set of vertices $W$ in a connected graph $G$ is called a Steiner dominating set if $W$ is both Steiner and dominating set. The Steiner domination number $\gamma_{st}(G)$ is the minimum cardinality of a Steiner dominating set of $G$. A…

Combinatorics · Mathematics 2020-03-02 Yueming Shen , Chengye Zhao , Chenglin Gao , Yunfang Tang

A word $u=u_1\dots u_n$ is a scattered factor of a word $w$ if $u$ can be obtained from $w$ by deleting some of its letters: there exist the (potentially empty) words $v_0,v_1,..,v_n$ such that $w = v_0u_1v_1...u_nv_n$. The set of all…

Formal Languages and Automata Theory · Computer Science 2020-03-11 Laura Barker , Pamela Fleischmann , Katharina Harwardt , Florin Manea , Dirk Nowotka

Multi-parameter persistent homology is a recent branch of topological data analysis. In this area, data sets are investigated through the lens of homology with respect to two or more scale parameters. The high computational cost of many…

Algebraic Topology · Mathematics 2020-10-30 Michael Kerber , Alexander Rolle

While traditional distributionally robust optimization (DRO) aims to minimize the maximal risk over a set of distributions, Agarwal and Zhang (2022) recently proposed a variant that replaces risk with excess risk. Compared to DRO, the new…

Optimization and Control · Mathematics 2024-05-29 Lijun Zhang , Haomin Bai , Wei-Wei Tu , Ping Yang , Yao Hu

Dynamic time warping distance (DTW) is a widely used distance measure between time series. The best known algorithms for computing DTW run in near quadratic time, and conditional lower bounds prohibit the existence of significantly faster…

Data Structures and Algorithms · Computer Science 2019-05-27 William Kuszmaul

We extend the theory of minimal absent words to (rooted and unrooted) trees, having edges labeled by letters from an alphabet $\Sigma$ of cardinality $\sigma$. We show that the set $\text{MAW}(T)$ of minimal absent words of a rooted (resp.…

Data Structures and Algorithms · Computer Science 2019-10-31 Gabriele Fici , Paweł Gawrychowski

We consider the approximate pattern matching problem under edit distance. In this problem we are given a pattern $P$ of length $w$ and a text $T$ of length $n$ over some alphabet $\Sigma$, and a positive integer $k$. The goal is to find all…

Data Structures and Algorithms · Computer Science 2018-11-06 Diptarka Chakraborty , Debarati Das , Michal Koucky

Consider a string of $n$ positions, i.e. a discrete string of length $n$. Units of length $k$ are placed at random on this string in such a way that they do not overlap, and as often as possible, i.e. until all spacings between neighboring…

Probability · Mathematics 2007-05-23 Chris A. J. Klaassen , J. Theo Runnenburg

The $k$-means method is an iterative clustering algorithm which associates each observation with one of $k$ clusters. It traditionally employs cluster centers in the same space as the observed data. By relaxing this requirement, it is…

Statistics Theory · Mathematics 2015-04-06 Matthew Thorpe , Florian Theil , Adam M. Johansen , Neil Cade