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The biological world, especially its majority microbial component, is strongly interacting and may be dominated by collective effects. In this review, we provide a brief introduction for statistical physicists of the way in which living…

Populations and Evolution · Quantitative Biology 2015-05-20 Nicholas Chia , Nigel Goldenfeld

Conversational systems have made significant progress in generating natural language responses. However, their potential as conversational search systems is currently limited due to their passive role in the information-seeking process. One…

Computation and Language · Computer Science 2024-02-27 Pierre Erbacher , Jian-Yun Nie , Philippe Preux , Laure Soulier

Building a working mental model of a protein typically requires weeks of reading, cross-referencing crystal and predicted structures, and inspecting ligand complexes, an effort that is slow, unevenly accessible, and often requires…

Biomolecules · Quantitative Biology 2025-10-22 Carles Navarro , Mariona Torrens , Philipp Thölke , Stefan Doerr , Gianni De Fabritiis

Voice-based systems like Amazon Alexa, Google Assistant, and Apple Siri, along with the growing popularity of OpenAI's ChatGPT and Microsoft's Copilot, serve diverse populations, including visually impaired and low-literacy communities.…

Human-Computer Interaction · Computer Science 2024-09-04 Sachin Pathiyan Cherumanal , Falk Scholer , Johanne R. Trippas , Damiano Spina

Recently, open-domain dialogue systems have attracted growing attention. Most of them use the sequence-to-sequence (Seq2Seq) architecture to generate responses. However, traditional Seq2Seq-based open-domain dialogue models tend to generate…

Computation and Language · Computer Science 2020-07-06 Heng-Da Xu , Xian-Ling Mao , Zewen Chi , Jing-Jing Zhu , Fanshu Sun , Heyan Huang

Information-seeking conversation, which aims to help users gather information through conversation, has achieved great progress in recent years. However, the research is still stymied by the scarcity of training data. To alleviate this…

Computation and Language · Computer Science 2023-08-15 Siheng Li , Cheng Yang , Yichun Yin , Xinyu Zhu , Zesen Cheng , Lifeng Shang , Xin Jiang , Qun Liu , Yujiu Yang

Audio Question Answering (AQA) constitutes a pivotal task in which machines analyze both audio signals and natural language questions to produce precise natural language answers. The significance of possessing high-quality, diverse, and…

We present BioRAGent, an interactive web-based retrieval-augmented generation (RAG) system for biomedical question answering. The system uses large language models (LLMs) for query expansion, snippet extraction, and answer generation while…

Computation and Language · Computer Science 2024-12-18 Samy Ateia , Udo Kruschwitz

Semantic communication (SemCom) improves communication efficiency by transmitting task-relevant information instead of raw bits and is expected to be a key technology for 6G networks. Recent advances in generative AI (GenAI) further enhance…

Signal Processing · Electrical Eng. & Systems 2026-01-07 Shunpu Tang , Yuanyuan Jia , Zijiu Yang , Qianqian Yang , Ruichen Zhang , Jun Du , Jihong Park , Zhiguo Shi , Jiming Chen

A Language Model is a term that encompasses various types of models designed to understand and generate human communication. Large Language Models (LLMs) have gained significant attention due to their ability to process text with human-like…

Computation and Language · Computer Science 2024-06-12 Sylvio Barbon Junior , Paolo Ceravolo , Sven Groppe , Mustafa Jarrar , Samira Maghool , Florence Sèdes , Soror Sahri , Maurice Van Keulen

Large Language Models (LLMs) have shown remarkable capabilities in general domains but often struggle with tasks requiring specialized knowledge. Conventional Retrieval-Augmented Generation (RAG) techniques typically retrieve external…

Computation and Language · Computer Science 2025-02-20 Yucheng Shi , Tianze Yang , Canyu Chen , Quanzheng Li , Tianming Liu , Xiang Li , Ninghao Liu

The growing reliance on data-driven decision-making highlights the need for more intuitive ways to access and analyze information stored in relational databases. However, the requirement of SQL knowledge has long been a significant barrier…

Databases · Computer Science 2024-10-10 Steve Tueno Fotso

With the advancement of communication technology,data is exchanged digitally over the network. At the other side the technology is also proven as a tool for unauthorized access to attackers. Thus the security of data to be transmitted…

Multimedia · Computer Science 2014-07-11 Manisha Rana , Rohit Tanwar

Any cutting-edge scientific research project requires a myriad of computational tools for data generation, management, analysis and visualization. Python is a flexible and extensible scientific programming platform that offered the perfect…

Quantitative Methods · Quantitative Biology 2008-03-14 Julius B. Lucks

Question-answering (QA) that comes naturally to humans is a critical component in seamless human-computer interaction. It has emerged as one of the most convenient and natural methods to interact with the web and is especially desirable in…

Computation and Language · Computer Science 2022-11-15 Deepak Gupta

AutoGen is an open-source framework that allows developers to build LLM applications via multiple agents that can converse with each other to accomplish tasks. AutoGen agents are customizable, conversable, and can operate in various modes…

Can large language models assist in data discovery? Data discovery predominantly happens via search on a data portal or the web, followed by assessment of the dataset to ensure it is fit for the intended purpose. The ability of…

Human-Computer Interaction · Computer Science 2024-02-01 Johanna Walker , Elisavet Koutsiana , Joe Massey , Gefion Thuermer , Elena Simperl

Biology is at the precipice of a new era where AI accelerates and amplifies the ability to study how cells operate, organize, and work as systems, revealing why disease happens and how to correct it. Organizations globally are prioritizing…

Large language models internalize a structural trade-off between truthfulness and obsequious flattery, emerging from reward optimization that conflates helpfulness with polite submission. This latent bias, known as sycophancy, manifests as…

Computation and Language · Computer Science 2026-05-19 Sanskar Pandey , Ruhaan Chopra , Angkul Puniya , Sohom Pal

Multi-agent collaborative driving promises improvements in traffic safety and efficiency through collective perception and decision making. However, existing communication media -- including raw sensor data, neural network features, and…

Multiagent Systems · Computer Science 2025-07-03 Xiangbo Gao , Keshu Wu , Hao Zhang , Kexin Tian , Yang Zhou , Zhengzhong Tu
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