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Graphs are a widely used paradigm for representing non-Euclidean data, with applications ranging from social network analysis to biomolecular prediction. While graph learning has achieved remarkable progress, real-world graph data presents…

Gene regulatory networks (GRNs) represent the causal relationships between transcription factors (TFs) and target genes in single-cell RNA sequencing (scRNA-seq) data. Understanding these networks is crucial for uncovering disease…

Artificial Intelligence · Computer Science 2024-10-22 Tejumade Afonja , Ivaxi Sheth , Ruta Binkyte , Waqar Hanif , Thomas Ulas , Matthias Becker , Mario Fritz

We introduce CausaLab, a scalable environment for evaluating interactive causal discovery by LLM agents. Unlike prior evaluations, CausaLab evaluates both whether an agent can solve a problem using causal evidence and whether its answer is…

Artificial Intelligence · Computer Science 2026-05-29 Junlin Yang , Dylan Zhang , Xiangchen Song , Qirun Dai , Xiao Liu , Yuen Chen , Aniket Vashishtha , Jing Shi , Chenhao Tan , Hao Peng

Recent advances in test-time scaling have enabled Large Language Models (LLMs) to display sophisticated reasoning abilities via extended Chain-of-Thought (CoT) generation. Despite their potential, these Reasoning LLMs (RLMs) often…

Computation and Language · Computer Science 2025-05-21 Zhen Xiong , Yujun Cai , Zhecheng Li , Yiwei Wang

Understanding causality is key to the success of NLP applications, especially in high-stakes domains. Causality comes in various perspectives such as enable and prevent that, despite their importance, have been largely ignored in the…

Computation and Language · Computer Science 2022-04-18 Linyi Yang , Zhen Wang , Yuxiang Wu , Jie Yang , Yue Zhang

Attention mechanisms are critical to the success of large language models (LLMs), driving significant advancements in multiple fields. However, for graph-structured data, which requires emphasis on topological connections, they fall short…

Artificial Intelligence · Computer Science 2025-05-06 Zhong Guan , Likang Wu , Hongke Zhao , Ming He , Jianpin Fan

Integrating large language models (LLMs) with knowledge graphs derived from domain-specific data represents an important advancement towards more powerful and factual reasoning. As these models grow more capable, it is crucial to enable…

Artificial Intelligence · Computer Science 2024-04-19 Stefan Dernbach , Khushbu Agarwal , Alejandro Zuniga , Michael Henry , Sutanay Choudhury

We seek to address a core challenge facing current Large Language Models (LLMs). LLMs have demonstrated superior performance in many tasks, yet continue to struggle with reasoning problems on explicit graphs that require multiple steps. To…

Machine Learning · Computer Science 2024-10-31 Alexander K Taylor , Anthony Cuturrufo , Vishal Yathish , Mingyu Derek Ma , Wei Wang

Large Language Models (LLMs) have showcased impressive reasoning capabilities, particularly when guided by specifically designed prompts in complex reasoning tasks such as math word problems. These models typically solve tasks using a…

Artificial Intelligence · Computer Science 2024-04-23 Lang Cao

This paper introduces a causal attribution model to enhance the interpretability of large language models (LLMs) and improve their causal reasoning abilities via precise fine-tuning. Despite LLMs' proficiency in diverse tasks, their…

Artificial Intelligence · Computer Science 2026-05-22 Hengrui Cai , Shengjie Liu , Rui Song

Recommendation systems aim to provide users with relevant suggestions, but often lack interpretability and fail to capture higher-level semantic relationships between user behaviors and profiles. In this paper, we propose a novel approach…

Information Retrieval · Computer Science 2024-01-26 Yan Wang , Zhixuan Chu , Xin Ouyang , Simeng Wang , Hongyan Hao , Yue Shen , Jinjie Gu , Siqiao Xue , James Y Zhang , Qing Cui , Longfei Li , Jun Zhou , Sheng Li

In machine learning, exploring data correlations to predict outcomes is a fundamental task. Recognizing causal relationships embedded within data is pivotal for a comprehensive understanding of system dynamics, the significance of which is…

Machine Learning · Computer Science 2023-11-28 Simi Job , Xiaohui Tao , Taotao Cai , Haoran Xie , Lin Li , Jianming Yong , Qing Li

Estimating individualized treatment effects from observational data presents a persistent challenge due to unmeasured confounding and structural bias. Causal Machine Learning (causal ML) methods, such as causal trees and doubly robust…

Machine Learning · Computer Science 2025-08-12 Po-Han Lee , Yu-Cheng Lin , Chan-Tung Ku , Chan Hsu , Pei-Cing Huang , Ping-Hsun Wu , Yihuang Kang

Knowledge graphs have emerged as a popular method for injecting up-to-date, factual knowledge into large language models (LLMs). This is typically achieved by converting the knowledge graph into text that the LLM can process in context.…

Computation and Language · Computer Science 2025-04-10 Elan Markowitz , Krupa Galiya , Greg Ver Steeg , Aram Galstyan

We propose a novel framework for generating causal graphs from narrative texts, bridging high-level causality and detailed event-specific relationships. Our method first extracts concise, agent-centered vertices using large language model…

Computation and Language · Computer Science 2025-04-11 Zehan Li , Ruhua Pan , Xinyu Pi

Graph data is becoming increasingly prevalent due to the growing demand for relational insights in AI across various domains. Organizations regularly use graph data to solve complex problems involving relationships and connections. Causal…

Machine Learning · Computer Science 2026-02-23 Simi Job , Xiaohui Tao , Taotao Cai , Haoran Xie , Jianming Yong , Xin Wang

Large language models (LLMs) typically improve performance by either retrieving semantically similar information, or enhancing reasoning abilities through structured prompts like chain-of-thought. While both strategies are considered…

Computation and Language · Computer Science 2024-10-16 Yejin Kim , Eojin Kang , Juae Kim , H. Howie Huang

Faithful evaluation of language model capabilities is crucial for deriving actionable insights that can inform model development. However, rigorous causal evaluations in this domain face significant methodological challenges, including…

Machine Learning · Computer Science 2025-06-13 Jikai Jin , Vasilis Syrgkanis , Sham Kakade , Hanlin Zhang

Despite surpassing human performance across mathematics, coding, and other knowledge-intensive tasks, large language models (LLMs) continue to struggle with causal reasoning. A core obstacle is the target data itself: causal systems are…

Artificial Intelligence · Computer Science 2026-05-12 Nicolás Astorga , Anita Kriz , Mihaela van der Schaar

Large language models (LLMs) are increasingly adopted for a variety of tasks with implicit graphical structures, such as planning in robotics, multi-hop question answering or knowledge probing, structured commonsense reasoning, and more.…

Computation and Language · Computer Science 2024-01-09 Heng Wang , Shangbin Feng , Tianxing He , Zhaoxuan Tan , Xiaochuang Han , Yulia Tsvetkov