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We report a first-principle study of the electronic and conduction properties of a quadruple-helix guanine wire (G4-wire), a DNA-derivative, with inner potassium ions. The analysis of the electronic structure highlights the presence of…

Soft Condensed Matter · Physics 2007-05-23 Arrigo Calzolari , Rosa Di felice , Elisa Molinari , Anna Garbesi

The double-helical structure of DNA results from canonical base pairing and stacking interactions. However, variations from steady-state conformations result from mechanical perturbations in cells. These different topologies have…

Biomolecules · Quantitative Biology 2019-04-05 Jack W Shepherd , Robert J Greenall , Matt I J Probert , Agnes Noy , Mark C Leake

In solution, DNA is a highly charged macromolecule which bears a unit of negative charge on each phosphate of its sugar-phosphate backbone. Although partially compensated by counterions adsorbed at or condensed near it, DNA still produces a…

Soft Condensed Matter · Physics 2024-03-11 Jonathan G. Hedley , Kush Coshic , Aleksei Aksimentiev , Alexei A. Kornyshev

We study the transport properties of a hybrid nanostructure composed of a ferromagnet, two quantum dots, and a superconductor connected in series. By using the non-equilibrium Green's function approach, we have calculated the electric…

Mesoscale and Nanoscale Physics · Physics 2015-05-14 E. C. Siqueira , G. G. Cabrera

While the thermodynamics of DNA hybridization is well understood, much less is known about the kinetics of this classic system. Filling this gap in our understanding has new urgency because DNA nanotechnology often depends critically on…

Soft Condensed Matter · Physics 2013-10-28 Thomas E. Ouldridge , Petr Šulc , Flavio Romano , Jonathan P. K. Doye , Ard A. Louis

Numerous experiments on charge transfer in DNA yield a contradictory picture of the transfer: on the one hand they suggest that it is a very slow process and the charge is almost completely localized on one Watson-Crick pair, but on the…

Biological Physics · Physics 2013-04-22 V. D. Lakhno , V. B. Sultanov

We report on our theoretical investigations of the electronic states in a DNA molecule. We have used a two-leg charge ladder model where electron-electron interactions and the electron spin have been taken into account. The energy spectra…

Disordered Systems and Neural Networks · Physics 2009-11-10 V. M. Apalkov , Tapash Chakraborty

We present a methodology for computing the current-voltage response of a molecular wire within the Landauer-Buttiker formalism based upon transforming the cummulative transmission probability into an eigenvalue problem. The method is…

Materials Science · Physics 2007-05-23 Eric R. Bittner

We investigate the electronic transport through a suspended carbon-nanotube quantum dot. In the presence of a magnetic field perpendicular to the nanotube and a nearby metallic gate, two forces act on the electrons: the Laplace and the…

Mesoscale and Nanoscale Physics · Physics 2012-07-19 Gianluca Rastelli , Manuel Houzet , Leonid I. Glazman , Fabio Pistolesi

Double-stranded DNA translocates through sufficiently large nanopores either in a linear, single-file fashion or in a folded hairpin conformation when captured somewhere along its length. We show that the folding state of DNA can be…

Biological Physics · Physics 2018-08-15 Niklas Ermann , Nikita Hanikel , Vivian Wang , Kaikai Chen , Ulrich F. Keyser

We review recent advances in the DNA sequencing based on the measurement of transverse electrical currents. Device configurations proposed in the literature are classified according to whether the molecular fingerprints appear as the major…

Mesoscale and Nanoscale Physics · Physics 2015-03-10 Han Seul Kim , Yong-Hoon Kim

Electron transport in graphene is along the sheet but junction devices are often made by stacking different sheets together in a "side-contact" geometry which causes the current to flow perpendicular to the sheets within the device. Such…

Computational Physics · Physics 2015-04-08 Xiang-Guo Li , Iek-Heng Chu , X. -G. Zhang , Hai-Ping Cheng

We present a tight-binding model study of a two-terminal graphene nanopore device for sequential determination of DNA bases. Using Green's function technique we investigate the changes in electronic transport properties of the device due to…

Mesoscale and Nanoscale Physics · Physics 2022-06-20 Sourav Kundu , S. N. Karmakar

The quantum transport in a narrow channel (NC) is studied in the presence of a time-dependent delta-profile electric field. The electric field is taken to be transversely polarized, with frequency $\omega$, causing inter-subband and…

Mesoscale and Nanoscale Physics · Physics 2015-06-25 C. S. Chu , C. S. Tang

We investigate the influence of a dissipative environment which effectively comprises the effects of counterions and hydration shells, on the transport properties of short \DNA wires. Their electronic structure is captured by a…

Soft Condensed Matter · Physics 2007-05-23 R. Gutierrez , S. Mandal , G. Cuniberti

We study dc and ac transport along armchair graphene nanoribbons using the ${\bf k\cdot p}$ spectrum and eigenfunctions and general linear-response expressions for the conductivities. Then we contrast the results with those for transport…

Mesoscale and Nanoscale Physics · Physics 2020-01-08 M. Zubair , M. Bahrami , P. Vasilopoulos

Quantun spin transport through a short DNA chain connected to ferromagnetic electrodes has been investigated by the transfer matrix method. We describe the system by a tight-binding model where the parameters are extracted from the…

Soft Condensed Matter · Physics 2009-11-11 X. F. Wang , Tapash Chakraborty

The structure of DNA double helix is stabilized by metal counterions condensed to a diffuse layer around the macromolecule. The dynamics of counterions in real conditions is governed by the electric fields from DNA and other biological…

Biological Physics · Physics 2020-10-27 O. O. Zdorevskyi , S. M. Perepelytsya

Motivated by recent experiments of successfully carving out stable carbon atomic chains from graphene, we investigate a device structure of a carbon chain connecting two zigzag graphene nanoribbons with highly tunable spin-dependent…

Mesoscale and Nanoscale Physics · Physics 2013-06-17 Yuehua Xu , Bao-Ji Wang , San-Huang Ke

Two-dimensional graphene, carbon nanotubes and graphene nanoribbons represent a novel class of low dimensional materials that could serve as building blocks for future carbon-based nanoelectronics. Although these systems share a similar…

Mesoscale and Nanoscale Physics · Physics 2009-06-05 Alessandro Cresti , Norbert Nemec , Blanca Biel , Gabriel Niebler , Francois Triozon , Gianaurelio Cuniberti , Stephan Roche
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