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Predicting bioactivity and physical properties of molecules is a longstanding challenge in drug design. Most approaches use molecular descriptors based on a 2D representation of molecules as a graph of atoms and bonds, abstracting away the…

Quantitative Methods · Quantitative Biology 2020-10-27 William McCorkindale , Carl Poelking , Alpha A. Lee

Quantitative Structure-Activity Relationship (QSAR) modeling is key in drug discovery, but classical methods face limitations when handling high-dimensional data and capturing complex molecular interactions. This research proposes enhancing…

Quantum Physics · Physics 2025-07-09 Alejandro Giraldo , Daniel Ruiz , Mariano Caruso , Guido Bellomo

Poroelasticity can be classified with geophysics and describes the interaction between solids deformation and the pore pressure in a porous medium. The investigation of this effect is anywhere interesting where a porous medium and a fluid…

Geophysics · Physics 2025-06-06 Bianca Kretz , Willi Freeden , Volker Michel

Porous membranes are thin solid structures that allow the flow to pass through their tiny openings, called pores. Flow inertia may play a significant role in several filtration flows of natural and engineering interest. Here, we develop a…

Ionic transport in nanopores is a fundamentally and technologically important problem in view of its occurrence in biological processes and its impact on novel DNA sequencing applications. Using microscopic calculations, here we show that…

Soft Condensed Matter · Physics 2009-09-26 Michael Zwolak , Johan Lagerqvist , Massimiliano Di Ventra

Membrane pores are implicated in several critical functions, including cell fusion and the transport of signaling molecules for intercellular communication. However, these structural features are often difficult to probe directly. Droplet…

Soft Condensed Matter · Physics 2025-11-13 Nivedina A. Sarma , David A. King , Xuefei Wu , Brett A. Helms , Paul D. Ashby , Thomas P. Russell , Ahmad K. Omar

A deceptively simple descriptor, viz. the number of carbon / non-hydrogenic atoms present in a molecule, is proposed for the development of useful quantitative-structure-property-relationship (QSPR) models. It is tested in models pertaining…

Chemical Physics · Physics 2007-05-23 S. Giri , D. R. Roy , P. Bultinck , V. Subramanian , P. K. Chattaraj

Drying of fluids undergoing sol-gel transition in porous media, a process crucial for the consolidation of damaged porous structures in cultural heritage, often leads to skin formation at the surface. This phenomenon significantly hinders…

Soft Condensed Matter · Physics 2025-09-29 Romane Le Dizès Castell , Marc Prat , Noushine Shahidzadeh , Sara Jabbari-Farouji

Modular quantum processors require a compiler to reason about two resources at the same time: local device connectivity and communication across QPUs. A mapping that is acceptable on a single coupling graph may be unsuitable for a modular…

Quantum Physics · Physics 2026-05-14 Soumyadip Sarkar , Subhasree Bhattacharjee

We use a density functional approach to calculate the contact angle of the water model on a heterogeneous, graphite-like surface. The surface heterogeneity results from the pre-adsorption of a layer of spherical species. The pre-adsorbed…

Soft Condensed Matter · Physics 2022-10-04 K. Dąbrowska , O. Pizio , S. Sokołowski

We develop a semi-analytical model of self-diffusioosmotic transport in active pores, which includes advective transport and the inverse chemical reaction which consumes solute. In previous work (Phys. Rev. Lett. 129, 188003, 2022), we have…

Soft Condensed Matter · Physics 2024-02-23 G. C. Antunes , P. Malgaretti , J. Harting

Pairs of similar compounds that only differ by a small structural modification but exhibit a large difference in their binding affinity for a given target are known as activity cliffs (ACs). It has been hypothesised that quantitative…

Machine Learning · Computer Science 2023-04-25 Markus Dablander , Thierry Hanser , Renaud Lambiotte , Garrett M. Morris

Liquid-liquid phase separation of aqueous two-phase system (ATPS) is fundamental across physical and biological sciences. While well understood for passive systems, how this process is regulated by active agents such as motile bacteria…

Soft Condensed Matter · Physics 2025-11-25 Dixi Yang , Anheng Wang , Chunming Wang , Hajime Tanaka , Jiaxing Yuan

Micro/nanoporous membranes have been used extensively in biological and medical applications associated with filtration, particle sorting, cell separation, and real-time sensing. Expanding its applications to microfluidics offers several…

Determining the structure of water adsorbed on solid surfaces is a notoriously difficult task, and pushes the limits of experimental and theoretical techniques. Here, we follow the evolution of water agglomerates on Fe3O4(001); a complex…

Efficient water transport through nanostructure membranes is essential for advancing filtration and desalination technologies. In this study, we investigate the flow of water through molybdenum disulfide (MoS$_{2}$) nanopores of varying…

Materials Science · Physics 2025-10-14 João Victor Lemos Vale , Lucas Cesena , Bruno H. S. Mendonça , Elizane E. de Moraes

A functional measure encompasses quantum corrections and is explored in the fluid/gravity correspondence. Corrections to response and transport coefficients in the second-order dissipative relativistic hydrodynamics are proposed, including…

High Energy Physics - Theory · Physics 2025-05-30 I. Kuntz , R. da Rocha

Fluid flow through layered materials with different wetting behavior is observed in a wide range of applications in biological, environmental and technical systems. Therefore, it is necessary to understand the occuring transport mechanisms…

Fluid Dynamics · Physics 2022-02-01 Cynthia Michalkowski , Kilian Weishaupt , Veronika Schleper , Rainer Helmig

Apparent liquid permeability (ALP) in ultra-confined permeable media is primarily governed by the pore confinement and fluid-rock interactions. A new ALP model is required to predict the interactive effect of the above two on the flow in…

Fluid Dynamics · Physics 2020-10-21 Dian Fan , Amin Ettehadtavakkol , Wendong Wang

Microscopic (pore-scale) properties of porous media affect and often determine their macroscopic (continuum- or Darcy-scale) counterparts. Understanding the relationship between processes on these two scales is essential to both the…

Numerical Analysis · Mathematics 2024-12-20 Kimoon Um , Eric Joseph Hall , Markos A. Katsoulakis , Daniel M. Tartakovsky