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We propose DeCoDi, a debiasing procedure for text-to-image diffusion-based models that changes the inference procedure, does not significantly change image quality, has negligible compute overhead, and can be applied in any diffusion-based…

Clinical coding is an administrative process that involves the translation of diagnostic data from episodes of care into a standard code format such as ICD10. It has many critical applications such as billing and aetiology research. The…

Information extraction from textual documents such as hospital records and healthrelated user discussions has become a topic of intense interest. The task of medical concept coding is to map a variable length text to medical concepts and…

Computation and Language · Computer Science 2018-05-03 Elena Tutubalina , Zulfat Miftahutdinov

We propose a novel and interpretable embedding method to represent the international statistical classification codes of diseases and related health problems (i.e., ICD codes). This method considers a self-attention mechanism within the…

Applications · Statistics 2019-06-14 Dixin Luo , Hongteng Xu , Lawrence Carin

Learning causal structure from observational data is a fundamental challenge in machine learning. However, the majority of commonly used differentiable causal discovery methods are non-identifiable, turning this problem into a continuous…

Machine Learning · Computer Science 2022-09-30 Yu Wang , An Zhang , Xiang Wang , Yancheng Yuan , Xiangnan He , Tat-Seng Chua

Causal inference is the process of capturing cause-effect relationship among variables. Most existing works focus on dealing with structured data, while mining causal relationship among factors from unstructured data, like text, has been…

Computation and Language · Computer Science 2021-04-22 Xiao Liu , Da Yin , Yansong Feng , Yuting Wu , Dongyan Zhao

Concept-based explanation approach is a popular model interpertability tool because it expresses the reasons for a model's predictions in terms of concepts that are meaningful for the domain experts. In this work, we study the problem of…

Machine Learning · Computer Science 2021-05-25 Mohammad Taha Bahadori , David E. Heckerman

The standardization of clinical data elements (CDEs) aims to ensure consistent and comprehensive patient information across various healthcare systems. Existing methods often falter when standardizing CDEs of varying representation and…

Information Retrieval · Computer Science 2025-05-08 Komal Gilani , Marlo Verket , Christof Peters , Michel Dumontier , Hans-Peter Brunner-La Rocca , Visara Urovi

International Classification of Diseases (ICD) coding plays an important role in systematically classifying morbidity and mortality data. In this study, we propose a hierarchical label-wise attention Transformer model (HiLAT) for the…

Machine Learning · Computer Science 2022-10-04 Leibo Liu , Oscar Perez-Concha , Anthony Nguyen , Vicki Bennett , Louisa Jorm

The recent advances in deep learning predominantly construct models in their internal representations, and it is opaque to explain the rationale behind and decisions to human users. Such explainability is especially essential for domain…

Computer Vision and Pattern Recognition · Computer Science 2022-11-16 Yiheng Zhang , Ting Yao , Zhaofan Qiu , Tao Mei

International Classification of Diseases (ICD) coding is the task of assigning ICD diagnosis codes to clinical notes. This can be challenging given the large quantity of labels (nearly 9,000) and lengthy texts (up to 8,000 tokens). However,…

Computation and Language · Computer Science 2023-09-19 Junwen Duan , Han Jiang , Ying Yu

Clinical coding is crucial for healthcare billing and data analysis. Manual clinical coding is labour-intensive and error-prone, which has motivated research towards full automation of the process. However, our analysis, based on US English…

Computation and Language · Computer Science 2025-06-19 Yidong Gan , Maciej Rybinski , Ben Hachey , Jonathan K. Kummerfeld

Social Determinants of Health correlate with patient outcomes but are rarely captured in structured data. Recent attention has been given to automatically extracting these markers from clinical text to supplement diagnostic systems with…

Machine Learning · Computer Science 2026-01-16 Sharim Khan , Paul Landes , Adam Cross , Jimeng Sun

In medical image analysis, model predictions can be affected by sensitive attributes, such as race and gender, leading to fairness concerns and potential biases in diagnostic outcomes. To mitigate this, we present a causal modeling…

Computer Vision and Pattern Recognition · Computer Science 2024-12-09 Bowei Tian , Yexiao He , Meng Liu , Yucong Dai , Ziyao Wang , Shwai He , Guoheng Sun , Zheyu Shen , Wanghao Ye , Yongkai Wu , Ang Li

Causal decomposition analysis (CDA) is an approach for modeling the impact of hypothetical interventions to reduce disparities. It is useful for identifying foci that future interventions, including multilevel and multimodal interventions,…

Methodology · Statistics 2026-04-28 John W. Jackson , Ting-Hsuan Chang , Aster Meche , Trang Q. Nguyen

In this paper, we tackle the problem of Generalized Category Discovery (GCD). Given a dataset containing both labelled and unlabelled images, the objective is to categorize all images in the unlabelled subset, irrespective of whether they…

Computer Vision and Pattern Recognition · Computer Science 2025-04-08 Yuanpei Liu , Kai Han

Biases in the dataset often enable the model to achieve high performance on in-distribution data, while poorly performing on out-of-distribution data. To mitigate the detrimental effect of the bias on the networks, previous works have…

Computation and Language · Computer Science 2023-12-07 Eojin Jeon , Mingyu Lee , Juhyeong Park , Yeachan Kim , Wing-Lam Mok , SangKeun Lee

Data imbalance is a fundamental challenge in applying language models to biomedical applications, particularly in ICD code prediction tasks where label and demographic distributions are uneven. While state-of-the-art language models have…

Machine Learning · Computer Science 2025-02-17 Precious Jones , Weisi Liu , I-Chan Huang , Xiaolei Huang

In practical statistical causal discovery (SCD), embedding domain expert knowledge as constraints into the algorithm is important for reasonable causal models reflecting the broad knowledge of domain experts, despite the challenges in the…

Machine Learning · Computer Science 2025-05-13 Masayuki Takayama , Tadahisa Okuda , Thong Pham , Tatsuyoshi Ikenoue , Shingo Fukuma , Shohei Shimizu , Akiyoshi Sannai

In-Context Learning (ICL) is an important paradigm for adapting Large Language Models (LLMs) to downstream tasks through a few demonstrations. Despite the great success of ICL, the limitation of the demonstration number may lead to…

Computation and Language · Computer Science 2024-01-10 Caoyun Fan , Jidong Tian , Yitian Li , Hao He , Yaohui Jin