English
Related papers

Related papers: Turing chemotactic instability in an HIV model

200 papers

In this paper we study a nonlinear reaction-diffusion system which models an infectious disease caused by bacteria such as those for cholera. One of the significant features in this model is that a certain portion of the recovered human…

Analysis of PDEs · Mathematics 2022-02-01 Hong-Ming Yin , Jun Zou

Many cellular patterns exhibit a reaction-diffusion component, suggesting that Turing instability may contribute to pattern formation. However, biological gene-regulatory pathways are more complex than simple Turing activator-inhibitor…

Molecular Networks · Quantitative Biology 2024-12-05 Hazlam S. Ahmad Shaberi , Aibek Kappassov , Antonio Matas-Gil , Robert G. Endres

The study of reaction-diffusion systems on networks is of paramount relevance for the understanding of nonlinear processes in systems where the topology is intrinsically discrete, such as the brain. Until now reaction-diffusion systems have…

Pattern Formation and Solitons · Physics 2025-10-22 Lorenzo Giambagli , Lucille Calmon , Riccardo Muolo , Timoteo Carletti , Ginestra Bianconi

We introduce a multi-species diffuse interface model for tumor growth, characterized by its incorporation of essential features related to chemotaxis, angiogenesis and proliferation mechanisms. We establish the weak well-posedness of the…

Analysis of PDEs · Mathematics 2023-11-23 Abramo Agosti , Andrea Signori

We introduce an in silico model for the initial spread of an aberrant phenotype with Warburg-like overflow metabolism within a healthy homeostatic tissue in contact with a nutrient reservoir (the blood), aimed at characterizing the role of…

Molecular Networks · Quantitative Biology 2017-06-09 Jorge Fernandez-de-Cossio-Diaz , Andrea De Martino , Roberto Mulet

We investigate the modulational instability of uniform wave packets governed by a discrete third-order nonlinear Schr\"odinger equation in finite square lattices, modeling light propagation in two-dimensional nonlinear waveguide arrays. We…

Pattern Formation and Solitons · Physics 2025-10-13 L. J. R. Bezerra , W. S. Dias

Dynamic models have been successfully used in producing estimates of HIV epidemics at national level, due to their epidemiological nature and their ability to simultaneously estimate prevalence, incidence, and mortality rates. Recently, HIV…

Methodology · Statistics 2016-02-19 Le Bao , Ben Sheng , Xiaoyue Niu , Yuan Tang , Tim Brown , Peter D. Ghys , Jeff W. Eaton

This paper addresses the question of how population diffusion affects the formation of the spatial patterns in the spatial epidemic model by Turing mechanisms. In particular, we present theoretical analysis to results of the numerical…

Populations and Evolution · Quantitative Biology 2009-09-29 Quan-Xing Liu , Zhen Jin

A class of reaction-diffusion virus dynamics models with intracellular state-dependent delay and a general non-linear infection rate functional response is investigated. We are interested in classical solutions with Lipschitz in-time…

Dynamical Systems · Mathematics 2019-01-01 Alexander Rezounenko

Phenotypic plasticity is a key factor in driving the evolution of species in the predator-prey interaction. The natural environment is replete with phenotypic plasticity, which is the source of inducible defences against predators,…

Populations and Evolution · Quantitative Biology 2024-11-19 Sangeeta Saha , Swadesh Pal , Roderick Melnik

The coexistence of different viral strains (quasispecies) within the same host are nowadays observed for a growing number of viruses, most notably HIV, Marburg and Ebola, but the conditions for the formation and survival of new strains have…

Populations and Evolution · Quantitative Biology 2008-01-20 Franco Bagnoli , Pietro Lio' , Luca Sguanci

Turing patterns are stationary, wave-like structures that emerge from the nonequilibrium assembly of reactive and diffusive components. While they are foundational in biophysics, their classical formulation relies on a single characteristic…

Soft Condensed Matter · Physics 2026-01-30 Siamak Mirfendereski , Ankur Gupta

We make a mathematical analysis of an age structured HIV infection model with both virus-to-cell and cell-to-cell transmissions to understand the dynamical behavior of HIV infection in vivo. In the model, we consider the proliferation of…

Populations and Evolution · Quantitative Biology 2018-09-26 Xiangming Zhang , Zhihua Liu

Methods are lacking to handle the problem of survival analysis in the presence of an interval-censored covariate, specifically the case in which the conditional hazard of the primary event of interest depends on the occurrence of a…

Self-organization, the ability of a system of microscopically interacting entities to shape macroscopically ordered structures, is ubiquitous in Nature. Spatio-temporal patterns are abundantly observed in a large plethora of applications,…

Pattern Formation and Solitons · Physics 2019-06-17 Malbor Asllani , Timoteo Carletti , Duccio Fanelli , Philip K. Maini

Empirical studies suggest that contact patterns follow heterogeneous inter-event times, meaning that intervals of high activity are followed by periods of inactivity. Combined with birth and death of individuals, these temporal constraints…

Physics and Society · Physics 2013-03-25 Luis Enrique Correa Rocha , Vincent D. Blondel

In the context of multistability driven diseases, like cancer, spatiotemporal plasticity plays a significant role to achieve a spectrum of phenotypic variations. The interplay between gene regulatory networks and environmental factors, such…

Populations and Evolution · Quantitative Biology 2026-02-17 Ranu Kundu , Priya Chakraborty , Sohini Guin , Shyam Sundar Poriah , Sayantari Ghosh

A dynamic model of non-lineal time-dependent ordinary differential equations (ODE) has been applied to the interactions of a HIV infection with the immune system cells. This model has been simplified into two compartments: lymph node and…

Cell Behavior · Quantitative Biology 2020-08-07 Miguel Ramos Pascual

We perform stability analysis of a kinetic bacterial chemotaxis model of bacterial self-organization, assuming that bacteria respond sharply to chemical signals. The resulting discontinuous tumbling kernel represents the key challenge for…

Analysis of PDEs · Mathematics 2024-06-27 Vincent Calvez , Gianluca Favre , Franca Hoffmann

We study the global stability of a class of models for in-vivo virus dynamics, that take into account the CTL immune response and display antigenic variation. This class includes a number of models that have been extensively used to model…

Populations and Evolution · Quantitative Biology 2013-01-21 Max O. Souza , Jorge P. Zubelli