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Large Language Models (LLMs) and Vision Language Models (VLMs) have recently shown promising capabilities in various scientific domain. In particular, these advances have opened new opportunities in drug discovery, where the ability to…

Artificial Intelligence · Computer Science 2026-05-13 Jueon Park , Wonjune Jang , Jiwoo Lee , Yein Park , Jaewoo Kang

This study explores the application and performance of Transformational Machine Learning (TML) in drug discovery. TML, a meta learning algorithm, excels in exploiting common attributes across various domains, thus developing composite…

Biomolecules · Quantitative Biology 2023-10-02 Adnan Mahmud , Oghenejokpeme Orhobor , Ross D. King

Recent advances in multimodal large language models (MLLMs) have enabled image-based question-answering capabilities. However, a key limitation is the use of CLIP as the visual encoder; while it can capture coarse global information, it…

Computer Vision and Pattern Recognition · Computer Science 2025-07-10 Vatsal Agarwal , Matthew Gwilliam , Gefen Kohavi , Eshan Verma , Daniel Ulbricht , Abhinav Shrivastava

Text-to-image diffusion models have emerged as powerful tools for high-quality image generation and editing. Many existing approaches rely on text prompts as editing guidance. However, these methods are constrained by the need for manual…

Computer Vision and Pattern Recognition · Computer Science 2025-05-21 Yuanyuan Chang , Yinghua Yao , Tao Qin , Mengmeng Wang , Ivor Tsang , Guang Dai

As large language models (LLMs) scale up, accuracy improves, but the autoregressive (AR) nature of decoding increases latency since each token requires a serial forward pass. Speculative decoding addresses this by employing a fast drafter…

Computation and Language · Computer Science 2025-10-06 Guanghao Li , Zhihui Fu , Min Fang , Qibin Zhao , Ming Tang , Chun Yuan , Jun Wang

Despite the remarkable advances in language modeling, current mainstream decoding methods still struggle to generate texts that align with human texts across different aspects. In particular, sampling-based methods produce less-repetitive…

Computation and Language · Computer Science 2024-06-06 Haozhe Ji , Pei Ke , Hongning Wang , Minlie Huang

Evolutionary algorithms have been successful in solving multi-objective optimization problems (MOPs). However, as a class of population-based search methodology, evolutionary algorithms require a large number of evaluations of the objective…

Neural and Evolutionary Computing · Computer Science 2024-08-16 Xueming Yan , Yaochu Jin

In the realm of large language model (LLM), as the size of large models increases, it also brings higher training costs. There is a urgent need to minimize the data size in LLM training. Compared with data selection method, the data…

Computation and Language · Computer Science 2025-04-25 Rong Yao , Hailin Hu , Yifei Fu , Hanting Chen , Wenyi Fang , Fanyi Du , Kai Han , Yunhe Wang

Diffusion-based language models (dLLMs) have emerged as a promising alternative to autoregressive language models, offering the potential for parallel token generation and bidirectional context modeling. However, harnessing this flexibility…

Computation and Language · Computer Science 2026-05-28 Jiyeon Kim , Sungik Choi , Yongrae Jo , Moontae Lee , Minjoon Seo

Molecular discovery, when formulated as an optimization problem, presents significant computational challenges because optimization objectives can be non-differentiable. Evolutionary Algorithms (EAs), often used to optimize black-box…

Discovering materials with desirable properties in an efficient way remains a significant problem in materials science. Many studies have tackled this problem by using different sets of information available about the materials. Among them,…

Materials Science · Physics 2025-03-04 Onur Boyar , Indra Priyadarsini , Seiji Takeda , Lisa Hamada

Diffusion-based large language models (dLLMs) have shown promising performance across various reasoning tasks, establishing themselves as an alternative to autoregressive large language models (LLMs). Unlike autoregressive LLMs that…

Computation and Language · Computer Science 2026-03-02 Xiangzhong Luo , Yilin An , Zhicheng Yu , Weichen Liu , Xu Yang

Molecule generation is advancing rapidly in chemical discovery and drug design. Flow matching methods have recently set the state of the art (SOTA) in unconditional molecule generation, surpassing score-based diffusion models. However,…

Diffusion language models (DLMs) generate text through iterative denoising, but inference requires full-sequence attention at every iteration, resulting in substantial redundant computation on masked tokens. Block-wise diffusion can reduce…

Machine Learning · Computer Science 2026-02-03 Fengrui Zuo , Zhiwei Ke , Yiming Liu , Wenqi Lou , Chao Wang , Xuehai Zhou

Diffusion models offer appealing properties for language generation, such as parallel decoding and iterative refinement, but the discrete and highly structured nature of text challenges the direct application of diffusion principles. In…

Computation and Language · Computer Science 2025-12-30 Ziqi Jin , Bin Wang , Xiang Lin , Lidong Bing , Aixin Sun

The development of large language models and multi-modal models has enabled the appealing idea of generating novel molecules from text descriptions. Generative modeling would shift the paradigm from relying on large-scale chemical screening…

Machine Learning · Computer Science 2025-08-25 Yifan Deng , Spencer S. Ericksen , Anthony Gitter

We present FlowLM, a flow matching language model transformed from pre-trained diffusion language models via efficient fine-tuning. By re-aligning the curved sampling trajectories of diffusion models into straight-line flows, FlowLM enables…

Computation and Language · Computer Science 2026-05-21 Runzhe Zhang , Letian Chen , Wenpeng Zhang , Zhouhan Lin , Peilin Zhao

Diffusion Multi-modal Large Language Models (dMLLMs) have recently emerged as a novel architecture unifying image generation and understanding. However, developing effective and efficient Test-Time Scaling (TTS) methods to unlock their full…

Computer Vision and Pattern Recognition · Computer Science 2026-04-09 Yi Xin , Siqi Luo , Tianxiang Xu , Qi Qin , Haoxing Chen , Kaiwen Zhu , Zhiwei Zhang , Yangfan He , Rongchao Zhang , Jinbin Bai , Shuo Cao , Bin Fu , Junjun He , Yihao Liu , Yuewen Cao , Xiaohong Liu

Due to the high complexity and technical requirements of industrial production processes, surface defects will inevitably appear, which seriously affects the quality of products. Although existing lightweight detection networks are highly…

Computer Vision and Pattern Recognition · Computer Science 2024-08-27 Xuyi Yu

AI models for drug discovery and chemical literature mining must interpret molecular images and generate outputs consistent with 3D geometry and stereochemistry. Most molecular language models rely on strings or graphs, while…

Computer Vision and Pattern Recognition · Computer Science 2026-01-22 Jing Lan , Hexiao Ding , Hongzhao Chen , Yufeng Jiang , Nga-Chun Ng , Gwing Kei Yip , Gerald W. Y. Cheng , Yunlin Mao , Jing Cai , Liang-ting Lin , Jung Sun Yoo