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Designing reward functions that guide generative molecular design (GMD) algorithms to desirable areas of chemical space is of critical importance in AI-driven drug discovery. Traditionally, this has been a manual and error-prone task; the…

Machine Learning · Computer Science 2023-12-18 Marius Urbonas , Temitope Ajileye , Paul Gainer , Douglas Pires

Designing molecules that must satisfy multiple, often conflicting objectives is a central challenge in molecular discovery. The enormous size of chemical space and the cost of high-fidelity simulations have driven the development of machine…

Machine Learning · Statistics 2025-12-22 Madhav R. Muthyala , Farshud Sorourifar , Tianhong Tan , You Peng , Joel A. Paulson

Molecular design and synthesis planning are two critical steps in the process of molecular discovery that we propose to formulate as a single shared task of conditional synthetic pathway generation. We report an amortized approach to…

Machine Learning · Computer Science 2022-03-15 Wenhao Gao , Rocío Mercado , Connor W. Coley

Recent advancements in reinforcement learning, particularly through Group Relative Policy Optimization (GRPO), have significantly improved multimodal large language models for complex reasoning tasks. However, two critical limitations…

Computer Vision and Pattern Recognition · Computer Science 2025-06-10 Jisheng Dang , Jingze Wu , Teng Wang , Xuanhui Lin , Nannan Zhu , Hongbo Chen , Wei-Shi Zheng , Meng Wang , Tat-Seng Chua

Retrieval-augmented generation (RAG) is increasingly deployed in real-world applications, where its reference-grounded design makes outputs appear trustworthy. This trust has spurred research on poisoning attacks that craft malicious…

Cryptography and Security · Computer Science 2026-02-09 Haoyang Hu , Zhejun Jiang , Yueming Lyu , Junyuan Zhang , Yi Liu , Ka-Ho Chow

High-fidelity generative models are increasingly needed in privacy-sensitive scenarios, where access to data is severely restricted due to regulatory and copyright constraints. This scarcity hampers model development--ironically, in…

Computer Vision and Pattern Recognition · Computer Science 2026-04-10 Xuemei Jia , Jiawei Du , Hui Wei , Jun Chen , Joey Tianyi Zhou , Zheng Wang

Learning to Optimize (L2O) approaches, including algorithm unrolling, plug-and-play methods, and hyperparameter learning, have garnered significant attention and have been successfully applied to the Alternating Direction Method of…

Optimization and Control · Mathematics 2024-09-27 Ling Liang , Cameron Austin , Haizhao Yang

Sample efficiency is a fundamental challenge in de novo molecular design. Ideally, molecular generative models should learn to satisfy a desired objective under minimal oracle evaluations (computational prediction or wet-lab experiment).…

Biomolecules · Quantitative Biology 2023-05-26 Jeff Guo , Philippe Schwaller

Unified Multimodal Models (UMMs) excel in general tasks but struggle to bridge the gap between personalized understanding and generation. Prior works largely rely on implicit token-level alignment via supervised fine-tuning, which fails to…

Computer Vision and Pattern Recognition · Computer Science 2026-05-12 Zijun Shen , Sihan Yang , Ruichuan An , Ziyu Guo , Hao Liang , Ming Lu , Renrui Zhang , Wentao Zhang

Generative models in molecular design tend to be richly parameterized, data-hungry neural models, as they must create complex structured objects as outputs. Estimating such models from data may be challenging due to the lack of sufficient…

Machine Learning · Computer Science 2021-08-17 Kevin Yang , Wengong Jin , Kyle Swanson , Regina Barzilay , Tommi Jaakkola

Optimizing complex systems, from discovering therapeutic drugs to designing high-performance materials, remains a fundamental challenge across science and engineering, as the underlying rules are often unknown and costly to evaluate.…

Machine Learning · Computer Science 2026-01-13 Tailin Zhou , Zhilin Chen , Wenlong Lyu , Zhitang Chen , Danny H. K. Tsang , Jun Zhang

We present TANGO (Tensor ANd Graph Optimization), a novel motion planning framework that integrates tensor-based compression with structured graph optimization to enable efficient and scalable trajectory generation. While optimization-based…

Robotics · Computer Science 2026-03-13 Gerhard Reinerth , Riddhiman Laha , Marcello Romano

Reinforcement learning (RL) has garnered increasing attention in text-to-image (T2I) generation. However, most existing RL approaches are tailored to either diffusion models or autoregressive models, overlooking an important alternative:…

Computer Vision and Pattern Recognition · Computer Science 2026-02-03 Yifu Luo , Xinhao Hu , Keyu Fan , Haoyuan Sun , Zeyu Chen , Bo Xia , Tiantian Zhang , Yongzhe Chang , Xueqian Wang

Text-to-Image (T2I) generation has long been an open problem, with compositional synthesis remaining particularly challenging. This task requires accurate rendering of complex scenes containing multiple objects that exhibit diverse…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Shijian Wang , Runhao Fu , Siyi Zhao , Qingqin Zhan , Xingjian Wang , Jiarui Jin , Yuan Lu , Hanqian Wu , Cunjian Chen

Automating molecular design using deep reinforcement learning (RL) holds the promise of accelerating the discovery of new chemical compounds. Existing approaches work with molecular graphs and thus ignore the location of atoms in space,…

Machine Learning · Statistics 2021-03-02 Gregor N. C. Simm , Robert Pinsler , José Miguel Hernández-Lobato

Molecular generation, an essential method for identifying new drug structures, has been supported by advancements in machine learning and computational technology. However, challenges remain in multi-objective generation, model…

Biomolecules · Quantitative Biology 2024-04-11 Ningfeng Liu , Jie Yu , Siyu Xiu , Xinfang Zhao , Siyu Lin , Bo Qiang , Ruqiu Zheng , Hongwei Jin , Liangren Zhang , Zhenming Liu

Reinforcement learning provides an automated framework for learning behaviors from high-level reward specifications, but in practice the choice of reward function can be crucial for good results -- while in principle the reward only needs…

Machine Learning · Computer Science 2022-10-19 Abhishek Gupta , Aldo Pacchiano , Yuexiang Zhai , Sham M. Kakade , Sergey Levine

Program synthesis is the task of automatically generating a program consistent with a specification. Recent years have seen proposal of a number of neural approaches for program synthesis, many of which adopt a sequence generation paradigm…

Machine Learning · Computer Science 2018-05-23 Rudy Bunel , Matthew Hausknecht , Jacob Devlin , Rishabh Singh , Pushmeet Kohli

Synthesizability remains a critical bottleneck in generative molecular design. While recent advances have addressed synthesizability in 2D graphs, extending these constraints to 3D for geometry-based conditional generation remains largely…

Biomolecular generators are often adapted with reward feedback to improve task-specific utility, but pushing utility alone can concentrate generation on a narrow family of candidates. Maintaining diversity is difficult because sample…

Computational Engineering, Finance, and Science · Computer Science 2026-05-20 Xinwu Ye , He Cao , Hao Li , Bin Feng , Zijing Liu , Xiangru Tang , Yu Li , Shenghua Gao