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In this perspective article, we present a multidisciplinary approach for characterizing protein structure networks. We first place our approach in its historical context and describe the manner in which it synthesizes concepts from quantum…

Molecular Networks · Quantitative Biology 2019-12-30 Vasundhara Gadiyaram , Smitha Vishveshwara , Saraswathi Vishveshwara

Graph Neural Networks (GNNs) have emerged as powerful tools for learning on graph-structured data, but often struggle to balance local and global information. While graph Transformers aim to address this by enabling long-range interactions,…

Machine Learning · Computer Science 2025-11-18 Jeongwhan Choi , Seungjun Park , Sumin Park , Sung-Bae Cho , Noseong Park

Topography is the expression of both internal and external processes of a planetary body. Thus hypsometry (the study of topography) is a way to decipher the dynamic of a planet. For that purpose, the statistics of height and slopes may be…

Earth and Planetary Astrophysics · Physics 2018-10-10 François Landais , Frédéric Schmidt , Shaun Lovejoy

Our first experience of dimension typically comes in the intuitive Euclidean sense: a line is one dimensional, a plane is two-dimensional, and a volume is three-dimensional. However, following the work of Mandelbrot \cite{mandelbrot},…

Physics Education · Physics 2022-09-05 Charles E. Creffield

In most natural and engineered systems, a set of entities interact with each other in complicated patterns that can encompass multiple types of relationships, change in time, and include other types of complications. Such systems include…

Physics and Society · Physics 2014-08-28 Mikko Kivelä , Alexandre Arenas , Marc Barthelemy , James P. Gleeson , Yamir Moreno , Mason A. Porter

Most complex systems can be captured by graphs or networks. Networks connect nodes (e.g.\ neurons) through edges (synapses), thus summarizing the system's structure. A popular way of interrogating graphs is community detection, which…

Physics and Society · Physics 2024-09-23 Luis F Seoane

Graph comparison plays a major role in many network applications. We often need a similarity metric for comparing networks according to their structural properties. Various network features - such as degree distribution and clustering…

Social and Information Networks · Computer Science 2013-07-16 Sadegh Aliakbary , Sadegh Motallebi , Jafar Habibi , Ali Movaghar

This review presents various image segmentation methods using complex networks. Image segmentation is one of the important steps in image analysis as it helps analyze and understand complex images. At first, it has been tried to classify…

Computer Vision and Pattern Recognition · Computer Science 2024-01-08 Amin Rezaei , Fatemeh Asadi

A large number of complex systems find a natural abstraction in the form of weighted networks whose nodes represent the elements of the system and the weighted edges identify the presence of an interaction and its relative strength. In…

Physics and Society · Physics 2009-04-23 M. Angeles Serrano , Marian Boguna , Alessandro Vespignani

Complex networks are usually characterized in terms of their topological, spatial, or information-theoretic properties and combinations of the associated metrics are used to discriminate networks into different classes or categories.…

Data Analysis, Statistics and Probability · Physics 2017-10-25 Marc Wiedermann , Jonathan F. Donges , Jürgen Kurths , Reik V. Donner

As network research becomes more sophisticated, it is more common than ever for researchers to find themselves not studying a single network but needing to analyze sets of networks. An important task when working with sets of networks is…

Social and Information Networks · Computer Science 2019-07-26 James P. Bagrow , Erik M. Bollt

Many studies have shown that we can gain additional information on time series by investigating their accompanying complex networks. In this work, we investigate the fundamental topological and fractal properties of recurrence networks…

Statistical Mechanics · Physics 2015-06-19 Jin-Long Liu , Zu-Guo Yu , Vo Anh

Complex systems are made up of many interacting components. Network science provides the tools to analyze and understand these interactions. Community detection is a key technique in network science for uncovering the structures that shape…

Physics and Society · Physics 2025-12-16 Louis Boucherie

The cosmic web is one of the most complex systems in nature, consisting of galaxies and clusters of galaxies joined by filaments and walls, leaving large empty regions called cosmic voids. The most common method of describing the web is a…

Cosmology and Nongalactic Astrophysics · Physics 2025-09-05 Jaan Einasto

We introduce a new family of models for growing networks. In these networks new edges are attached preferentially to vertices with higher number of connections, and new vertices are created by already existing ones, inheriting part of their…

Statistical Mechanics · Physics 2009-11-07 S. N. Dorogovtsev , A. N. Samukhin , J. F. F. Mendes

Modern computer networks support interesting new routing models in which traffic flows from a source s to a destination t can be flexibly steered through a sequence of waypoints, such as (hardware) middleboxes or (virtualized) network…

Networking and Internet Architecture · Computer Science 2017-09-04 Saeed Akhoondian Amiri , Klaus-Tycho Foerster , Riko Jacob , Stefan Schmid

Networks effectively capture interactions among components of complex systems, and have thus become a mainstay in many scientific disciplines. Growing evidence, especially from biology, suggest that networks undergo changes over time, and…

Methodology · Statistics 2020-03-10 Ali Shojaie

Many models and real complex systems possess critical thresholds at which the systems shift from one sate to another. The discovery of the early warnings of the systems in the vicinity of critical point are of great importance to estimate…

Statistical Mechanics · Physics 2017-02-08 Longfeng Zhao , Wei Li , Chunbin Yang , Jihui Han , Zhu Su , Yijiang Zou , Xu Cai

Multilayer network analysis has become a vital tool for understanding different relationships and their interactions in a complex system, where each layer in a multilayer network depicts the topological structure of a group of nodes…

Social and Information Networks · Computer Science 2017-09-18 Weiyi Liu , Pin-Yu Chen , Sailung Yeung , Toyotaro Suzumura , Lingli Chen

Methods connecting dynamical systems and graph theory have attracted increasing interest in the past few years, with applications ranging from a detailed comparison of different kinds of dynamics to the characterisation of empirical data.…

Statistical Mechanics · Physics 2018-01-18 Marcello A. Budroni , Andrea Baronchelli , Romualdo Pastor-Satorras