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While Large Language Models (LLMs) dominate tasks like natural language processing and computer vision, harnessing their power for spatial-temporal forecasting remains challenging. The disparity between sequential text and complex…

Machine Learning · Computer Science 2024-05-20 Lei Liu , Shuo Yu , Runze Wang , Zhenxun Ma , Yanming Shen

The integration of multi-omic data is pivotal for understanding complex diseases, but its high dimensionality and noise present significant challenges. Graph Neural Networks (GNNs) offer a robust framework for analyzing large-scale…

Quantitative Methods · Quantitative Biology 2024-12-23 Heming Zhang , Di Huang , Yixin Chen , Fuhai Li

Text-rich graphs, which exhibit rich textual information on nodes and edges, are prevalent across a wide range of real-world business applications. Large Language Models (LLMs) have demonstrated remarkable abilities in understanding text,…

Computation and Language · Computer Science 2024-04-30 Qi Zhu , Da Zheng , Xiang Song , Shichang Zhang , Bowen Jin , Yizhou Sun , George Karypis

Structured data, such as tables, graphs, and databases, play a critical role in plentiful NLP tasks such as question answering and dialogue system. Recently, inspired by Vision-Language Models, Graph Neutral Networks (GNNs) have been…

Computation and Language · Computer Science 2025-02-11 Yao Xu , Shizhu He , Jiabei Chen , Zeng Xiangrong , Bingning Wang , Guang Liu , Jun Zhao , Kang Liu

Due to the advantages of hypergraphs in modeling high-order relationships in complex systems, they have been applied to higher-order clustering, hypergraph neural networks and computer vision. These applications rely heavily on access to…

Social and Information Networks · Computer Science 2025-10-15 Bingqiao Gu , Jiale Zeng , Xingqin Qi , Dong Li

The design of safety-critical agents based on large language models (LLMs) requires more than simple prompt engineering. This paper presents a comprehensive information-theoretic analysis of how rule encodings in system prompts influence…

Artificial Intelligence · Computer Science 2025-10-10 Joachim Diederich

Graph matching can be formalized as a combinatorial optimization problem, where there are corresponding relationships between pairs of nodes that can be represented as edges. This problem becomes challenging when there are potential…

Computer Vision and Pattern Recognition · Computer Science 2023-01-06 Dongdong Chen , Yuxing Dai , Lichi Zhang , Zhihong Zhang

AMR-to-text generation is a problem recently introduced to the NLP community, in which the goal is to generate sentences from Abstract Meaning Representation (AMR) graphs. Sequence-to-sequence models can be used to this end by converting…

Computation and Language · Computer Science 2019-05-22 Marco Damonte , Shay B. Cohen

Recent advances in multimodal large language models (MLLMs) highlight the need for benchmarks that rigorously evaluate structured chart comprehension. Chart grounding refers to the bidirectional alignment between a chart's visual appearance…

Artificial Intelligence · Computer Science 2026-02-02 Xinhang Li , Jingbo Zhou , Pengfei Luo , Yixiong Xiao , Tong Xu

Large language models (LLMs) have demonstrated their strong capabilities in various domains, and have been recently integrated for graph analysis as graph language models (GLMs). With LLMs as the predictor, some GLMs can interpret unseen…

Computation and Language · Computer Science 2025-06-30 Junze Chen , Cheng Yang , Shujie Li , Zhiqiang Zhang , Yawen Li , Junping Du , Chuan Shi

Generalizing to unseen graph tasks without task-specific supervision is challenging: conventional graph neural networks are typically tied to a fixed label space, while large language models (LLMs) struggle to capture graph structure. We…

Machine Learning · Computer Science 2025-10-21 Duo Wang , Yuan Zuo , Guangyue Lu , Junjie Wu

Although Large Language Models (LLMs) have demonstrated remarkable progress, their proficiency in graph-related tasks remains notably limited, hindering the development of truly general-purpose models. Previous attempts, including…

Machine Learning · Computer Science 2025-08-20 Xiaojun Guo , Ang Li , Yifei Wang , Stefanie Jegelka , Yisen Wang

While graph neural networks (GNNs) have shown remarkable performance across diverse graph-related tasks, their high-dimensional hidden representations render them black boxes. In this work, we propose Graph Lingual Network (GLN), a GNN…

Machine Learning · Computer Science 2025-09-16 Sunwoo Kim , Soo Yong Lee , Jaemin Yoo , Kijung Shin

Large language models (LLMs) have demonstrated immense potential across various tasks. However, research for exploring and improving the capabilities of LLMs in interpreting graph structures remains limited. To address this gap, we conduct…

Computation and Language · Computer Science 2025-02-17 Jie He , Yijun Yang , Wanqiu Long , Deyi Xiong , Victor Gutierrez-Basulto , Jeff Z. Pan

To perform effective causal inference in high-dimensional datasets, initiating the process with causal discovery is imperative, wherein a causal graph is generated based on observational data. However, obtaining a complete and accurate…

Machine Learning · Computer Science 2025-04-18 Elahe Khatibi , Mahyar Abbasian , Zhongqi Yang , Iman Azimi , Amir M. Rahmani

Graphs play an important role in representing complex relationships in various domains like social networks, knowledge graphs, and molecular discovery. With the advent of deep learning, Graph Neural Networks (GNNs) have emerged as a…

Machine Learning · Computer Science 2024-06-05 Wenqi Fan , Shijie Wang , Jiani Huang , Zhikai Chen , Yu Song , Wenzhuo Tang , Haitao Mao , Hui Liu , Xiaorui Liu , Dawei Yin , Qing Li

Large language models (LLMs) demonstrate great potential for problems with implicit graphical structures, while recent works seek to enhance the graph reasoning capabilities of LLMs through specialized instruction tuning. The resulting…

Computation and Language · Computer Science 2024-10-14 Yizhuo Zhang , Heng Wang , Shangbin Feng , Zhaoxuan Tan , Xiaochuang Han , Tianxing He , Yulia Tsvetkov

Heterogeneous graph neural networks (HGNNs) excel at capturing structural and semantic information in heterogeneous graphs (HGs), while struggling to generalize across domains and tasks. With the rapid advancement of large language models…

Social and Information Networks · Computer Science 2025-07-31 Jinyu Yang , Cheng Yang , Shanyuan Cui , Zeyuan Guo , Liangwei Yang , Muhan Zhang , Zhiqiang Zhang , Chuan Shi

Pretraining plays a pivotal role in acquiring generalized knowledge from large-scale data, achieving remarkable successes as evidenced by large models in CV and NLP. However, progress in the graph domain remains limited due to fundamental…

Artificial Intelligence · Computer Science 2024-06-21 Yu Song , Haitao Mao , Jiachen Xiao , Jingzhe Liu , Zhikai Chen , Wei Jin , Carl Yang , Jiliang Tang , Hui Liu

Graphs with abundant attributes are essential in modeling interconnected entities and enhancing predictions across various real-world applications. Traditional Graph Neural Networks (GNNs) often require re-training for different graph tasks…

Computation and Language · Computer Science 2026-05-26 Yanchao Tan , Hang Lv , Pengxiang Zhan , Shiping Wang , Carl Yang