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We formally characterize a set of causality-based properties of metabolic networks. This set of properties aims at making precise several notions on the production of metabolites, which are familiar in the biologists' terminology. From a…

Computational Engineering, Finance, and Science · Computer Science 2010-02-23 Chiara Bodei , Andrea Bracciali , Davide Chiarugi , Roberta Gori

Causal mediation analysis examines causal pathways linking exposures to disease. The estimation of interventional effects, which are mediation estimands that overcome certain identifiability problems of natural effects, has been advanced…

Causality can be described in terms of a structural causal model (SCM) that carries information on the variables of interest and their mechanistic relations. For most processes of interest the underlying SCM will only be partially…

Machine Learning · Computer Science 2021-10-26 Matej Zečević , Devendra Singh Dhami , Petar Veličković , Kristian Kersting

We describe the interface between measure theoretic probability and causal inference by constructing causal models on probability spaces within the potential outcomes framework. We find that measure theory provides a precise and instructive…

Statistics Theory · Mathematics 2019-07-04 Irineo Cabreros , John D. Storey

Causal inference has recently gained notable attention across various fields like biology, healthcare, and environmental science, especially within explainable artificial intelligence (xAI) systems, for uncovering the causal relationships…

Machine Learning · Computer Science 2025-01-13 Xiaofeng Xiao , Khawlah Alharbi , Pengyu Zhang , Hantang Qin , Xubo Yue

Meta-analysis, by synthesizing effect estimates from multiple studies conducted in diverse settings, stands at the top of the evidence hierarchy in clinical research. Yet, conventional approaches based on fixed- or random-effects models…

We compare two approaches for modelling imperfect information in infinite games by using finite-state automata. The first, more standard approach views information as the result of an observation process driven by a sequential Mealy…

Computer Science and Game Theory · Computer Science 2020-01-31 Dietmar Berwanger , Laurent Doyen

It is evidence that representation learning can improve model's performance over multiple downstream tasks in many real-world scenarios, such as image classification and recommender systems. Existing learning approaches rely on establishing…

Machine Learning · Computer Science 2022-02-18 Mengyue Yang , Xinyu Cai , Furui Liu , Xu Chen , Zhitang Chen , Jianye Hao , Jun Wang

Randomized experiments are a powerful methodology for data-driven evaluation of decisions or interventions. Yet, their validity may be undermined by network interference. This occurs when the treatment of one unit impacts not only its…

Methodology · Statistics 2024-10-08 Sadegh Shirani , Mohsen Bayati

We show how to smoothly incorporate in the object-oriented paradigm constructs to raise, compose, and handle effects in an arbitrary monad. The underlying pure calculus is meant to be a representative of the last generation of OO languages,…

Programming Languages · Computer Science 2025-04-23 Francesco Dagnino , Paola Giannini , Elena Zucca

Transfer learning has recently become the dominant paradigm of machine learning. Pre-trained models fine-tuned for downstream tasks achieve better performance with fewer labelled examples. Nonetheless, it remains unclear how to develop…

Machine Learning · Computer Science 2024-01-30 Jonas Pfeiffer , Sebastian Ruder , Ivan Vulić , Edoardo Maria Ponti

A common approach to model memristive systems is to include empirical window functions to describe edge effects and non-linearities in the change of the memristance. We demonstrate that under quite general conditions, each window function…

Mesoscale and Nanoscale Physics · Physics 2016-05-09 Panayiotis S. Georgiou , Sophia N. Yaliraki , Emmanuel M. Drakakis , Mauricio Barahona

To gain deeper insights into a complex sensor system through the lens of causality, we present common and individual causal mechanism estimation (CICME), a novel three-step approach to inferring causal mechanisms from heterogeneous data…

Machine Learning · Computer Science 2025-08-21 Jingyi Yu , Tim Pychynski , Marco F. Huber

Meta-analysis represents a widely accepted approach for evaluating the accuracy of diagnostic tools in clinical and psychological investigations. This paper investigates the applicability of multinomial tree models recently suggested in the…

Methodology · Statistics 2024-05-29 Annamaria Guolo

Interactions between internet users are mediated by their devices and the common support infrastructure in data centres. Keeping track of causality amongst actions that take place in this distributed system is key to provide a seamless…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-08-12 Seyed Hossein Haeri , Peter Van Roy , Carlos Baquero , Christopher Meiklejohn

We formulate a framework for describing behaviour of effectful higher-order recursive programs. Examples of effects are implemented using effect operations, and include: execution cost, nondeterminism, global store and interaction with a…

Logic in Computer Science · Computer Science 2021-12-30 Niccolò Veltri , Niels F. W. Voorneveld

We introduce the abstract notions of "monadic operational semantics", a small-step semantics where computational effects are modularly modeled by a monad, and "type-and-effect system", including "effect types" whose interpretation lifts…

Programming Languages · Computer Science 2025-04-15 Francesco Dagnino , Paola Giannini , Elena Zucca

In recent years, explainable machine learning methods have been very successful. Despite their success, most explainable machine learning methods are applied to black-box models without any domain knowledge. By incorporating domain…

Machine Learning · Computer Science 2023-09-26 Dangxing Chen

Causal Models are like Dependency Graphs and Belief Nets in that they provide a structure and a set of assumptions from which a joint distribution can, in principle, be computed. Unlike Dependency Graphs, Causal Models are models of…

Artificial Intelligence · Computer Science 2013-03-08 John F. Lemmer

Traditional models of climate change use complex systems of coupled equations to simulate physical processes across the Earth system. These simulations are highly computationally expensive, limiting our predictions of climate change and…

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