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While Large Language Models (LLMs) have shown exceptional generalization capabilities, their ability to process graph data, such as molecular structures, remains limited. To bridge this gap, this paper proposes Graph2Token, an efficient…

Machine Learning · Computer Science 2025-03-11 Runze Wang , Mingqi Yang , Yanming Shen

Recent advances in personalized MLLMs enable effective capture of user-specific concepts, supporting both recognition of personalized concepts and contextual captioning. However, humans typically explore and reason over relations among…

Computer Vision and Pattern Recognition · Computer Science 2025-05-20 Yifan Xiang , Zhenxi Zhang , Bin Li , Yixuan Weng , Shoujun Zhou , Yangfan He , Keqin Li

Our research integrates graph data with Large Language Models (LLMs), which, despite their advancements in various fields using large text corpora, face limitations in encoding entire graphs due to context size constraints. This paper…

Computation and Language · Computer Science 2024-03-15 Debarati Das , Ishaan Gupta , Jaideep Srivastava , Dongyeop Kang

Large Language Models (LLMs) have demonstrated remarkable capabilities in modeling sequential textual data and generalizing across diverse tasks. However, adapting LLMs to effectively handle structural data, such as knowledge graphs or web…

Computation and Language · Computer Science 2025-11-12 Jiarui Feng , Donghong Cai , Yixin Chen , Muhan Zhang

Large language models (LLMs) have demonstrated impressive reasoning abilities yet remain unreliable on knowledge-intensive, multi-hop questions -- they miss long-tail facts, hallucinate when uncertain, and their internal knowledge lags…

Computation and Language · Computer Science 2025-10-13 Jia Ao Sun , Hao Yu , Fabrizio Gotti , Fengran Mo , Yihong Wu , Yuchen Hui , Jian-Yun Nie

Causal reasoning capabilities are essential for large language models (LLMs) in a wide range of applications, such as education and healthcare. But there is still a lack of benchmarks for a better understanding of such capabilities. Current…

Computation and Language · Computer Science 2024-12-25 Ruibo Tu , Hedvig Kjellström , Gustav Eje Henter , Cheng Zhang

Large language models (LLMs) have shown promise in table Question Answering (Table QA). However, extending these capabilities to multi-table QA remains challenging due to unreliable schema linking across complex tables. Existing methods…

Artificial Intelligence · Computer Science 2025-11-25 Xixi Wang , Miguel Costa , Jordanka Kovaceva , Shuai Wang , Francisco C. Pereira

Multimodal Large Language Models (MLLMs) have garnered significant attention for their strong visual-semantic understanding. Most existing chart benchmarks evaluate MLLMs' ability to parse information from charts to answer questions.…

Computation and Language · Computer Science 2025-03-10 Xiangnan Chen , Yuancheng Fang , Qian Xiao , Juncheng Li , Jun Lin , Siliang Tang , Yi Yang , Yueting Zhuang

In recent years, Natural Language Processing (NLP) has played a significant role in various Artificial Intelligence (AI) applications such as chatbots, text generation, and language translation. The emergence of large language models (LLMs)…

Computation and Language · Computer Science 2024-07-10 Amanda Kau , Xuzeng He , Aishwarya Nambissan , Aland Astudillo , Hui Yin , Amir Aryani

Graphs are foundational across domains but remain hard to use without deep expertise. LLMs promise accessible natural language (NL) graph analytics, yet they fail to process industry-scale property graphs effectively and efficiently: such…

The parallels between protein sequences and natural language in their sequential structures have inspired the application of large language models (LLMs) to protein understanding. Despite the success of LLMs in NLP, their effectiveness in…

Quantitative Methods · Quantitative Biology 2024-07-09 Yiqing Shen , Zan Chen , Michail Mamalakis , Luhan He , Haiyang Xia , Tianbin Li , Yanzhou Su , Junjun He , Yu Guang Wang

Knowledge Graphs (KGs) are essential for the functionality of GraphRAGs, a form of Retrieval-Augmented Generative Systems (RAGs) that excel in tasks requiring structured reasoning and semantic understanding. However, creating KGs for…

Computation and Language · Computer Science 2024-12-11 Ahan Bhatt , Nandan Vaghela , Kush Dudhia

Graphs with abundant attributes are essential in modeling interconnected entities and enhancing predictions across various real-world applications. Traditional Graph Neural Networks (GNNs) often require re-training for different graph tasks…

Computation and Language · Computer Science 2026-05-26 Yanchao Tan , Hang Lv , Pengxiang Zhan , Shiping Wang , Carl Yang

Large language models (LLMs) have recently demonstrated remarkable progress in formal theorem proving. Yet their ability to serve as practical assistants for mathematicians, filling in missing steps within complex proofs, remains…

Computation and Language · Computer Science 2025-10-06 Xiao-Wen Yang , Zihao Zhang , Jianuo Cao , Zhi Zhou , Zenan Li , Lan-Zhe Guo , Yuan Yao , Taolue Chen , Yu-Feng Li , Xiaoxing Ma

Humankind's understanding of the world is fundamentally linked to our perception and cognition, with \emph{human languages} serving as one of the major carriers of \emph{world knowledge}. In this vein, \emph{Large Language Models} (LLMs)…

Artificial Intelligence · Computer Science 2024-06-27 Huajun Chen

Recommendation systems aim to provide users with relevant suggestions, but often lack interpretability and fail to capture higher-level semantic relationships between user behaviors and profiles. In this paper, we propose a novel approach…

Information Retrieval · Computer Science 2024-01-26 Yan Wang , Zhixuan Chu , Xin Ouyang , Simeng Wang , Hongyan Hao , Yue Shen , Jinjie Gu , Siqiao Xue , James Y Zhang , Qing Cui , Longfei Li , Jun Zhou , Sheng Li

Real-world complex networks are usually being modeled as graphs. The concept of graphs assumes that the relations within the network are binary (for instance, between pairs of nodes); however, this is not always true for many real-life…

Social and Information Networks · Computer Science 2020-05-06 Alessia Antelmi , Gennaro Cordasco , Bogumił Kamiński , Paweł Prałat , Vittorio Scarano , Carmine Spagnuolo , Przemyslaw Szufel

GraphRAG enhances large language models (LLMs) to generate quality answers for user questions by retrieving related facts from external knowledge graphs. However, current GraphRAG methods are primarily evaluated on and overly tailored for…

Machine Learning · Computer Science 2025-11-04 Renjie Liu , Haitian Jiang , Xiao Yan , Bo Tang , Jinyang Li

Large Language Models (LLMs) have shown remarkable capabilities across various domains, yet they struggle with knowledge-intensive tasks in areas that demand factual accuracy, e.g. industrial automation and healthcare. Key limitations…

Machine Learning · Computer Science 2025-09-10 Michael Banf , Johannes Kuhn

Attention mechanisms are critical to the success of large language models (LLMs), driving significant advancements in multiple fields. However, for graph-structured data, which requires emphasis on topological connections, they fall short…

Artificial Intelligence · Computer Science 2025-05-06 Zhong Guan , Likang Wu , Hongke Zhao , Ming He , Jianpin Fan