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This paper introduces the shapr R package, a versatile tool for generating Shapley value-based prediction explanations for machine learning and statistical regression models. Moreover, the shaprpy Python library brings the core capabilities…

Machine Learning · Computer Science 2026-02-03 Martin Jullum , Lars Henry Berge Olsen , Jon Lachmann , Annabelle Redelmeier

This paper serves as a reference and introduction to using the R package dapper. dapper encodes a sampling framework which allows exact Markov chain Monte Carlo simulation of parameters and latent variables in a statistical model given…

Computation · Statistics 2024-12-20 Kevin Eng , Jordan A. Awan , Nianqiao Phyllis Ju , Vinayak A. Rao , Ruobin Gong

IDP is a knowledge base system based on first order logic. It is finding its way to a larger public but is still facing practical challenges. Adoption of new languages requires a newcomer-friendly way for users to interact with it. Both an…

Programming Languages · Computer Science 2015-11-04 Ingmar Dasseville , Gerda Janssens

Automated data-driven modeling, the process of directly discovering the governing equations of a system from data, is increasingly being used across the scientific community. PySINDy is a Python package that provides tools for applying the…

The following paper presents nonprobsvy -- an R package for inference based on non-probability samples. The package implements various approaches that can be categorized into three groups: prediction-based approach, inverse probability…

Methodology · Statistics 2025-08-21 Łukasz Chrostowski , Piotr Chlebicki , Maciej Beręsewicz

We present a new approach to automatic amortized inference in universal probabilistic programs which improves performance compared to current methods. Our approach is a variation of inference compilation (IC) which leverages deep neural…

Machine Learning · Computer Science 2019-10-29 William Harvey , Andreas Munk , Atılım Güneş Baydin , Alexander Bergholm , Frank Wood

New and upgraded radio interferometers produce data at massive rates and will require significant improvements in analysis techniques to reach their promised levels of performance in a routine manner. Until these techniques are fully…

Instrumentation and Methods for Astrophysics · Physics 2012-06-29 Peter K. G. Williams , Casey J. Law , Geoffrey C. Bower

Individual patient data (IPD) are essential for statistical inference in clinical research. However, privacy concerns, high data-sharing costs, and restrictive access often make IPD unavailable. Conventional synthetic data generation…

Applications · Statistics 2025-09-23 Zixuan Zhao , Zexin Ren , Guannan Zhai , Feifang Hu , Will Ma , En Xie , Qian Shi

Context: The effectiveness of data selection approaches in improving the performance of cross project defect prediction(CPDP) has been shown in multiple previous studies. Beside that, replication studies play an important role in the…

Software Engineering · Computer Science 2020-04-22 Seyedrebvar Hosseini , Burak Turhan

This article explains the usage of R package CausalModels, which is publicly available on the Comprehensive R Archive Network. While packages are available for sufficiently estimating causal effects, there lacks a package that provides a…

Methodology · Statistics 2023-07-19 Joshua Wolff Anderson , Cyril Rakovski

We present PPI++: a computationally lightweight methodology for estimation and inference based on a small labeled dataset and a typically much larger dataset of machine-learning predictions. The methods automatically adapt to the quality of…

Machine Learning · Statistics 2024-03-27 Anastasios N. Angelopoulos , John C. Duchi , Tijana Zrnic

We present vir, an R package for variational inference with shrinkage priors. Our package implements variational and stochastic variational algorithms for linear and probit regression models, the use of which is a common first step in many…

Computation · Statistics 2021-02-18 Suchit Mehrotra , Arnab Maity

Efficiently optimizing multi-model inference pipelines for fast, accurate, and cost-effective inference is a crucial challenge in machine learning production systems, given their tight end-to-end latency requirements. To simplify the…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-28 Saeid Ghafouri , Kamran Razavi , Mehran Salmani , Alireza Sanaee , Tania Lorido-Botran , Lin Wang , Joseph Doyle , Pooyan Jamshidi

Click-through rate (CTR) prediction is a core task in recommender systems. Existing methods (IDRec for short) rely on unique identities to represent distinct users and items that have prevailed for decades. On one hand, IDRec often faces…

Information Retrieval · Computer Science 2024-03-18 Yuanbo Gao , Peng Lin , Dongyue Wang , Feng Mei , Xiwei Zhao , Sulong Xu , Jinghe Hu

Mediation analysis is one of the most widely used statistical techniques in the social, behavioral, and medical sciences. Mediation models allow to study how an independent variable affects a dependent variable indirectly through one or…

Computation · Statistics 2022-08-18 Andreas Alfons , Nüfer Y. Ateş , Patrick J. F. Groenen

The intelligent Distributed Dispatch and Scheduling (iDDS) service is a versatile workflow orchestration system designed for large-scale, distributed scientific computing. iDDS extends traditional workload and data management by integrating…

SPEEDY is an Eclipse-based IDE for exploring techniques that assist users in generating correct specifications, particularly including invariant inference algorithms and tools. It integrates with several back-end tools that propose…

Logic in Computer Science · Computer Science 2014-04-29 David R. Cok , Scott C. Johnson

This work introduces Information Inference Diagrams (I2Ds), a modeling framework aiming to complement existing approaches for privacy and security analysis of distributed systems. It is intended to support established threat modeling…

Cryptography and Security · Computer Science 2025-10-28 Sebastian Rehms , Stefan Köpsell , Verena Klös , Florian Tschorsch

When performing an aggregate data meta-analysis of a continuous outcome, researchers often come across primary studies that report the sample median of the outcome. However, standard meta-analytic methods typically cannot be directly…

The condvis package is for interactive visualization of sections in data space, showing fitted models on the section, and observed data near the section. The primary goal is the interpretation of complex models, and showing how the observed…

Other Statistics · Statistics 2016-10-04 Mark O'Connell , Catherine B. Hurley , Katarina Domijan
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