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Patient summarization is essential for clinicians to provide coordinated care and practice effective communication. Automated summarization has the potential to save time, standardize notes, aid clinical decision making, and reduce medical…

Information Retrieval · Computer Science 2018-10-30 Emily Alsentzer , Anne Kim

Clinical Reasoning on Electronic Health Records (EHRs) is a fundamental yet challenging task in modern healthcare. While in-context learning (ICL) offers a promising inference-time adaptation paradigm for large language models (LLMs) in EHR…

Machine Learning · Computer Science 2026-04-09 Yue Fang , Weibin Liao , Yuxin Guo , Jiaran Gao , Hongxin Ding , Jinyang Zhang , Xinke Jiang , Zhibang Yang , Junfeng Zhao , Yasha Wang , Liantao Ma

While randomized controlled trials (RCTs) are the gold-standard for establishing the efficacy and safety of a medical treatment, real-world evidence (RWE) generated from real-world data (RWD) has been vital in post-approval monitoring and…

In this paper, we introduce EHR-SeqSQL, a novel sequential text-to-SQL dataset for Electronic Health Record (EHR) databases. EHR-SeqSQL is designed to address critical yet underexplored aspects in text-to-SQL parsing: interactivity,…

Computation and Language · Computer Science 2024-07-31 Jaehee Ryu , Seonhee Cho , Gyubok Lee , Edward Choi

Large Language Models (LLMs) have demonstrated remarkable performance across various domains, including healthcare. However, their ability to effectively represent structured non-textual data, such as the alphanumeric medical codes used in…

The summarization capabilities of pretrained and large language models (LLMs) have been widely validated in general areas, but their use in scientific corpus, which involves complex sentences and specialized knowledge, has been less…

Computation and Language · Computer Science 2025-05-05 Xiuying Chen , Tairan Wang , Qingqing Zhu , Taicheng Guo , Shen Gao , Zhiyong Lu , Xin Gao , Xiangliang Zhang

Healthcare data are inherently multimodal, including electronic health records (EHR), medical images, and multi-omics data. Combining these multimodal data sources contributes to a better understanding of human health and provides optimal…

Machine Learning · Computer Science 2022-10-28 Farida Mohsen , Hazrat Ali , Nady El Hajj , Zubair Shah

Electronic health records (EHR) and claims data are rich sources of real-world data that reflect patient health status and healthcare utilization. Querying these databases to answer epidemiological questions is challenging due to the…

Computation and Language · Computer Science 2025-01-08 Angelo Ziletti , Leonardo D'Ambrosi

Pre-consultation is a critical component of effective healthcare delivery. However, generating comprehensive pre-consultation questionnaires from complex, voluminous Electronic Medical Records (EMRs) is a challenging task. Direct Large…

Artificial Intelligence · Computer Science 2025-08-04 Ruiqing Ding , Qianfang Sun , Yongkang Leng , Hui Yin , Xiaojian Li

Patient similarity assessment, which identifies patients similar to a given patient, can help improve medical care. The assessment can be performed using Electronic Medical Records (EMRs). Patient similarity measurement requires converting…

Information Retrieval · Computer Science 2022-09-20 Hoda Memarzadeh , Nasser Ghadiri , Matthias Samwald , Maryam Lotfi Shahreza

Large Language Models (LLMs) have been extensively evaluated for general summarization tasks as well as medical research assistance, but they have not been specifically evaluated for the task of summarizing real-world evidence (RWE) from…

Computation and Language · Computer Science 2025-06-24 Arjun Mukerji , Michael L. Jackson , Jason Jones , Neil Sanghavi

EHR audit logs are a highly granular stream of events that capture clinician activities, and is a significant area of interest for research in characterizing clinician workflow on the electronic health record (EHR). Existing techniques to…

Computation and Language · Computer Science 2023-11-28 Benjamin C. Warner , Thomas Kannampallil , Seunghwan Kim

Health literacy has emerged as a crucial factor in making appropriate health decisions and ensuring treatment outcomes. However, medical jargon and the complex structure of professional language in this domain make health information…

Computation and Language · Computer Science 2022-01-11 Yue Guo , Wei Qiu , Yizhong Wang , Trevor Cohen

Text summarization is crucial for mitigating information overload across domains like journalism, medicine, and business. This research evaluates summarization performance across 17 large language models (OpenAI, Google, Anthropic,…

Computation and Language · Computer Science 2025-04-08 Anantharaman Janakiraman , Behnaz Ghoraani

The successes of foundation models such as ChatGPT and AlphaFold have spurred significant interest in building similar models for electronic medical records (EMRs) to improve patient care and hospital operations. However, recent hype has…

Efficient communication between patients and clinicians plays an important role in shared decision-making. However, clinical reports are often lengthy and filled with clinical jargon, making it difficult for domain experts to identify…

Computation and Language · Computer Science 2025-09-10 Libo Ren , Yee Man Ng , Lifeng Han

Harmonizing medication data across Electronic Health Record (EHR) systems is a persistent barrier to monitoring medications for opioid use disorder (MOUD). In heterogeneous EHR systems, key prescription attributes are scattered across…

Artificial Intelligence · Computer Science 2025-10-27 Zhe Fei , Mehmet Yigit Turali , Shreyas Rajesh , Xinyang Dai , Huyen Pham , Pavan Holur , Yuhui Zhu , Larissa Mooney , Yih-Ing Hser , Vwani Roychowdhury

Electronic health records (EHRs) contain important longitudinal information on individuals who have received medical care. Traditionally, EHRs have been used to support a wide range of administrative activities such as billing and clinical…

Databases · Computer Science 2024-11-18 Arian Aminoleslami , Geoffrey M. Anderson , Davide Chicco

This study proposes a risk prediction method based on a Multi-Scale Temporal Alignment Network (MSTAN) to address the challenges of temporal irregularity, sampling interval differences, and multi-scale dynamic dependencies in Electronic…

Machine Learning · Computer Science 2025-11-27 Wei-Chen Chang , Lu Dai , Ting Xu

Today, despite decades of developments in medicine and the growing interest in precision healthcare, vast majority of diagnoses happen once patients begin to show noticeable signs of illness. Early indication and detection of diseases,…

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