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Dirac electrons in a single-component molecular conductor [Pd(dddt)$_2$] under pressure have been examined using a tight-binding model which consists of HOMO (Highest Occupied Molecular Orbital) and LUMO (Lowest Unoccupied Molecular…

Materials Science · Physics 2017-04-25 Reizo Kato , Yoshikazu Suzumura

Mathematical models describing the spatial spreading and invasion of populations of biological cells are often developed in a continuum modelling framework using reaction-diffusion equations. While continuum models based on linear diffusion…

Cellular Automata and Lattice Gases · Physics 2024-01-23 Matthew J Simpson , Keeley M Murphy , Scott W McCue , Pascal R Buenzli

This paper considers particle propagation in a cylindrical molecular communication channel, e.g. a simplified model of a blood vessel. Emitted particles are influenced by diffusion, flow, and a vertical force induced e.g. by gravity or…

Computational Physics · Physics 2019-02-26 Maximilian Schäfer , Wayan Wicke , Rudolf Rabenstein , Robert Schober

A strongly interacting plasma of linearly dispersing electron and hole excitations in two spatial dimensions (2D), also known as a Dirac fluid, can be captured by relativistic hydrodynamics and shares many universal features with other…

Strongly Correlated Electrons · Physics 2023-04-19 Yan-Qi Wang , Roman Rausch , Christoph Karrasch , Joel E. Moore

Aggregation and fragmentation of single molecules in the cell environment lead to a spectrum of diffusivities and to statistical laws of movement very different from typical Brownian motion. Current models of intracellular transport do not…

Statistical Mechanics · Physics 2020-07-08 M. Hidalgo-Soria , E. Barkai

We consider a finite element approximation for a system consisting of the evolution of a closed planar curve by forced curve shortening flow coupled to a reaction-diffusion equation on the evolving curve. The scheme for the curve evolution…

Numerical Analysis · Mathematics 2016-07-07 John W. Barrett , Klaus Deckelnick , Vanessa Styles

Computational modelling of diffusion in heterogeneous media is prohibitively expensive for problems with fine-scale heterogeneities. A common strategy for resolving this issue is to decompose the domain into a number of non-overlapping…

Computational Physics · Physics 2021-08-26 Nathan G. March , Elliot J. Carr , Ian W. Turner

A cross-diffusion system describing ion transport through biological membranes or nanopores in a bounded domain with mixed Dirichlet-Neumann boundary conditions is analyzed. The ion concentrations solve strongly coupled diffusion equations…

Analysis of PDEs · Mathematics 2017-06-23 Anita Gerstenmayer , Ansgar Jüngel

Understanding the behavior of biomolecules such as proteins requires understanding the critical influence of the surrounding fluid (solvent) environment--water with mobile salt ions such as sodium. Unfortunately, for many studies, fully…

Soft Condensed Matter · Physics 2015-05-27 J. P. Bardhan , D. A. Tejani , N. S. Wieckowski , A. Ramaswamy , M. G. Knepley

The interactions between diffusing molecules and membrane-bound receptors drive numerous cellular processes. In this work, we develop a spatial model of molecular interactions with membrane receptors by homogenizing the cell membrane and…

Quantitative Methods · Quantitative Biology 2025-01-24 Anil Cengiz , Sean D Lawley

Models of diffusive processes that occur on evolving domains are frequently employed to describe biological and physical phenomena, such as diffusion within expanding tissues or substrates. Previous investigations into these models either…

Populations and Evolution · Quantitative Biology 2023-10-09 Stuart T. Johnston , Matthew J. Simpson

When addressing spatial biological questions using mathematical models, symmetries within the system are often exploited to simplify the problem by reducing its physical dimension. In a reduced-dimension model molecular movement is…

Quantitative Methods · Quantitative Biology 2025-02-17 Natasha S. Savage

We present a unified approach to characterising fast-reaction limits of systems of either two reaction-diffusion equations, or one reaction-diffusion equation and one ordinary differential equation, on unbounded domains, motivated by models…

Analysis of PDEs · Mathematics 2016-04-26 E. C. M. Crooks , D. Hilhorst

In this paper, we study the diffusive limit of the steady state radiative heat transfer system for non-homogeneous Dirichlet boundary conditions in a bounded domain with flat boundaries. A composite approximate solution is constructed using…

Analysis of PDEs · Mathematics 2022-11-01 Mohamed Ghattassi , Xiaokai Huo , Nader Masmoudi

This paper provides a new numerical strategy to solve fractional in space reaction-diffusion equations on bounded domains under homogeneous Dirichlet boundary conditions. Using the matrix transform method the fractional Laplacian operator…

Numerical Analysis · Mathematics 2024-03-19 Lidia Aceto , Paolo Novati

Reactivity boundaries that divide the origin and destination of trajectories are crucial of importance to reveal the mechanism of reactions, which was recently found to exist robustly even at high energies for index-one saddles [Phys. Rev.…

Chemical Physics · Physics 2013-11-13 Yutaka Nagahata , Hiroshi Teramoto , Chun-Biu Li , Shinnosuke Kawai , Tamiki Komatsuzaki

While "Dirac cone" dispersions can only be meaningfully defined in two dimensional (2D) systems, the notion of a Dirac point can be extended to three dimensional (3D) classical wave systems. We show that a simple cubic photonic crystal…

Materials Science · Physics 2013-11-01 Xueqin Huang , Fengming Liu , C. T. Chan

We analyse the self-diffusiophoresis of a spherical particle animated by a nonuniform chemical reaction at its boundary. We consider two models of solute absorption, one with a specified distribution of interfacial solute flux, and one…

Fluid Dynamics · Physics 2015-03-03 Ehud Yariv , Sebastien Michelin

Diffusion to capture is an ubiquitous phenomenon in many fields in biology and physical chemistry, with implications as diverse as ligand-receptor binding on eukaryotic and bacterial cells, nutrient uptake by colonies of unicellular…

Soft Condensed Matter · Physics 2018-07-05 Marta Galanti , Duccio Fanelli , Sergey D. Traytak , Francesco Piazza

Recently, the problem of boundary stabilization for unstable linear constant-coefficient coupled reaction-diffusion systems was solved by means of the backstepping method. The extension of this result to systems with advection terms and…

Optimization and Control · Mathematics 2016-03-17 Rafael Vazquez , Miroslav Krstic
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