Related papers: Subgraph Counting in Subquadratic Time for Bounded…
The problem of computing all maximal induced subgraphs of a graph G that have a graph property P, also called the maximal P-subgraphs problem, is considered. This problem is studied for hereditary, connected-hereditary and rooted-hereditary…
A dominating set $D$ of a graph $G$ is a set of vertices such that any vertex in $G$ is in $D$ or its neighbor is in $D$. Enumeration of minimal dominating sets in a graph is one of central problems in enumeration study since enumeration of…
A fundamental algorithmic problem in computational biology is to find all subgraphs of a given type (superbubbles, snarls, and ultrabubbles) in a directed or bidirected input graph. These correspond to regions of genetic variation and are…
We initiate the study of combinatorial algorithms for Triangle Detection in $H$-free graphs. The goal is to decide if a graph that forbids a fixed pattern $H$ as a subgraph contains a triangle, using only "combinatorial" methods that…
Understanding how a vertex relates to a set of vertices is a fundamental task in graph analysis. Given a graph $G$ and a vertex set $X \subseteq V(G)$, consider the collection of subsets of the form $N(u) \cap X$ where $u$ ranges over all…
We study the computational complexity of the problem $\#\text{IndSub}(\Phi)$ of counting $k$-vertex induced subgraphs of a graph $G$ that satisfy a graph property $\Phi$. Our main result establishes an exhaustive and explicit classification…
One fundamental problem in temporal graph analysis is to count the occurrences of small connected subgraph patterns (i.e., motifs), which benefits a broad range of real-world applications, such as anomaly detection, structure prediction,…
Finding dense subgraphs is a core problem in graph mining with many applications in diverse domains. At the same time many real-world networks vary over time, that is, the dataset can be represented as a sequence of graph snapshots. Hence,…
Hypergraphs are generalisation of graphs in which a hyperedge can connect any number of vertices. It can describe n-ary relationships and high-order information among entities compared to conventional graphs. In this paper, we study the…
We study the \textsc{Max Partial $H$-Coloring} problem: given a graph $G$, find the largest induced subgraph of $G$ that admits a homomorphism into $H$, where $H$ is a fixed pattern graph without loops. Note that when $H$ is a complete…
We consider the following two algorithmic problems: given a graph $G$ and a subgraph $H\subseteq G$, decide whether $H$ is an isometric or a geodesically convex subgraph of $G$. It is relatively easy to see that the problems can be solved…
An $H$-graph is an intersection graph of connected subgraphs of a suitable subdivision of a fixed graph $H$. Many important classes of graphs, including interval graphs, circular-arc graphs, and chordal graphs, can be expressed as…
We shall present an algorithm for determining whether or not a given planar graph H can ever be a subgraph of a 4-regular planar graph. The algorithm has running time O(|H|^{2.5}) and can be used to find an explicit 4-regular planar graph G…
Given a graph $G$, the maximal induced subgraphs problem asks to enumerate all maximal induced subgraphs of $G$ that belong to a certain hereditary graph class. While its optimization version, known as the minimum vertex deletion problem in…
We introduce a new concept of a subgraph class called a superbubble for analyzing assembly graphs, and propose an efficient algorithm for detecting it. Most assembly algorithms utilize assembly graphs like the de Bruijn graph or the overlap…
We revisit the well-studied problem of triangle count estimation in graph streams. Given a graph represented as a stream of $m$ edges, our aim is to compute a $(1\pm\varepsilon)$-approximation to the triangle count $T$, using a small space…
We present linear time {\it in-place} algorithms for several basic and fundamental graph problems including the well-known graph search methods (like depth-first search, breadth-first search, maximum cardinality search), connectivity…
We study the problem #IndSub(P) of counting all induced subgraphs of size k in a graph G that satisfy the property P. This problem was introduced by Jerrum and Meeks and shown to be #W[1]-hard when parameterized by k for some families of…
For a finite set $\mathcal{F}$ of graphs, the $\mathcal{F}$-Hitting problem aims to compute, for a given graph $G$ (taken from some graph class $\mathcal{G}$) of $n$ vertices (and $m$ edges) and a parameter $k\in\mathbb{N}$, a set $S$ of…
Complex networks have become increasingly popular for modeling various real-world phenomena. Realistic generative network models are important in this context as they avoid privacy concerns of real data and simplify complex network research…