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The task of deducing three-dimensional molecular configurations from their two-dimensional graph representations holds paramount importance in the fields of computational chemistry and pharmaceutical development. The rapid advancement of…

Biomolecules · Quantitative Biology 2025-01-09 Bobin Yang , Jie Deng , Zhenghan Chen , Ruoxue Wu

The problem of unsupervised learning node embeddings in graphs is one of the important directions in modern network science. In this work we propose a novel framework, which is aimed to find embeddings by \textit{discriminating…

Machine Learning · Statistics 2020-01-24 Stanislav Tsepa , Maxim Panov

Effective information analysis generally boils down to properly identifying the structure or geometry of the data, which is often represented by a graph. In some applications, this structure may be partly determined by design constraints or…

Machine Learning · Computer Science 2016-11-07 Dorina Thanou , Xiaowen Dong , Daniel Kressner , Pascal Frossard

Inferring missing links or detecting spurious ones based on observed graphs, known as link prediction, is a long-standing challenge in graph data analysis. With the recent advances in deep learning, graph neural networks have been used for…

Social and Information Networks · Computer Science 2023-01-03 Xingping Xian , Tao Wu , Xiaoke Ma , Shaojie Qiao , Yabin Shao , Chao Wang , Lin Yuan , Yu Wu

Network comparison is a widely-used tool for analyzing complex systems, with applications in varied domains including comparison of protein interactions or highlighting changes in structure of trade networks. In recent years, a number of…

Social and Information Networks · Computer Science 2023-03-09 Miguel E. P. Silva , Robert E. Gaunt , Luis Ospina-Forero , Caroline Jay , Thomas House

In wireless communications, transforming network into graphs and processing them using deep learning models, such as Graph Neural Networks (GNNs), is one of the mainstream network optimization approaches. While effective, the generative AI…

Networking and Internet Architecture · Computer Science 2024-05-09 Jiacheng Wang , Yinqiu Liu , Hongyang Du , Dusit Niyato , Jiawen Kang , Haibo Zhou , Dong In Kim

The study of quantum evolution on graphs for diversified topologies is beneficial to modeling various realistic systems. A systematic method, the dimerized decomposition, is proposed to analyze the dynamics on an arbitrary network. By…

Quantum Physics · Physics 2020-03-04 He Feng , Tian-Min Yan , Y. H. Jiang

Embedding static graphs in low-dimensional vector spaces plays a key role in network analytics and inference, supporting applications like node classification, link prediction, and graph visualization. However, many real-world networks…

Machine Learning · Computer Science 2021-07-23 Claudio D. T. Barros , Matheus R. F. Mendonça , Alex B. Vieira , Artur Ziviani

Over the last few years, network science has proved to be useful in modeling a variety of complex systems, composed of a large number of interconnected units. The intricate pattern of interactions often allows the system to achieve complex…

Physics and Society · Physics 2024-05-30 Jean-François de Kemmeter , Timoteo Carletti

Traditional Graph Neural Networks (GNNs) rely on message passing, which amounts to permutation-invariant local aggregation of neighbour features. Such a process is isotropic and there is no notion of `direction' on the graph. We present a…

Machine Learning · Computer Science 2022-05-03 Ahmed A. A. Elhag , Gabriele Corso , Hannes Stärk , Michael M. Bronstein

Diffusion models have established themselves as state-of-the-art generative models across various data modalities, including images and videos, due to their ability to accurately approximate complex data distributions. Unlike traditional…

Machine Learning · Computer Science 2025-10-23 Daniel Wesego

Creating graphic layouts is a fundamental step in graphic designs. In this work, we present a novel generative model named LayoutDiffusion for automatic layout generation. As layout is typically represented as a sequence of discrete tokens,…

Computer Vision and Pattern Recognition · Computer Science 2023-08-16 Junyi Zhang , Jiaqi Guo , Shizhao Sun , Jian-Guang Lou , Dongmei Zhang

We consider constrained ergodic resource optimization in wireless networks with graph-structured interference. We train a diffusion model policy to match expert conditional distributions over resource allocations. By leveraging a…

Signal Processing · Electrical Eng. & Systems 2026-04-08 Yigit Berkay Uslu , Samar Hadou , Shirin Saeedi Bidokhti , Alejandro Ribeiro

We present SinDiffusion, leveraging denoising diffusion models to capture internal distribution of patches from a single natural image. SinDiffusion significantly improves the quality and diversity of generated samples compared with…

Computer Vision and Pattern Recognition · Computer Science 2022-11-23 Weilun Wang , Jianmin Bao , Wengang Zhou , Dongdong Chen , Dong Chen , Lu Yuan , Houqiang Li

Topology identification and inference of processes evolving over graphs arise in timely applications involving brain, transportation, financial, power, as well as social and information networks. This chapter provides an overview of graph…

Signal Processing · Electrical Eng. & Systems 2025-12-12 Gonzalo Mateos , Yanning Shen , Georgios B. Giannakis , Ananthram Swami

Diffusion models have shown great promise in data generation, yet generating time series data remains challenging due to the need to capture complex temporal dependencies and structural patterns. In this paper, we present \textit{TSGDiff},…

Machine Learning · Computer Science 2025-11-18 Lifeng Shen , Xuyang Li , Lele Long

While there exists a wide variety of graph neural networks (GNN) for node classification, only a minority of them adopt mechanisms that effectively target noise propagation during the message-passing procedure. Additionally, a very…

Machine Learning · Computer Science 2022-04-26 Steph-Yves Louis , Alireza Nasiri , Fatima J. Rolland , Cameron Mitro , Jianjun Hu

Dynamics on and of networks refer to changes in topology and node-associated signals, respectively and are pervasive in many socio-technological systems, including social, biological, and infrastructure networks. Due to practical…

Signal Processing · Electrical Eng. & Systems 2025-06-11 Bishwadeep Das , Andrei Buciulea , Antonio G. Marques , Elvin Isufi

In a wireless network the set of transmitting nodes changes frequently because of the MAC scheduler and the traffic load. Previously, connectivity in wireless networks was analyzed using static geometric graphs, and as we show leads to an…

Information Theory · Computer Science 2015-03-13 RadhaKrishna Ganti , Martin Haenggi

In this paper we propose a distributed algorithm for the estimation and control of the connectivity of ad-hoc networks in the presence of a random topology. First, given a generic random graph, we introduce a novel stochastic power…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-06-17 Paolo Di Lorenzo , Sergio Barbarossa