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Identifying interacting partners from two sets of protein sequences has important applications in computational biology. Interacting partners share similarities across species due to their common evolutionary history, and feature…

Biomolecules · Quantitative Biology 2024-12-31 Umberto Lupo , Damiano Sgarbossa , Martina Milighetti , Anne-Florence Bitbol

Hyperparameter optimization (HPO) plays a central role in the automated machine learning (AutoML). It is a challenging task as the response surfaces of hyperparameters are generally unknown, hence essentially a global optimization problem.…

Machine Learning · Computer Science 2021-06-18 Zebin Yang , Aijun Zhang

Recent GRPO-based approaches built on flow matching models have shown remarkable improvements in human preference alignment for text-to-image generation. Nevertheless, they still suffer from the sparse reward problem: the terminal reward of…

Computer Vision and Pattern Recognition · Computer Science 2026-02-26 Haoyou Deng , Keyu Yan , Chaojie Mao , Xiang Wang , Yu Liu , Changxin Gao , Nong Sang

Particle swarm optimization (PSO) is a well-known optimization algorithm that shows good performance in solving different optimization problems. However, PSO usually suffers from slow convergence. In this article, a reinforcement…

Neural and Evolutionary Computing · Computer Science 2023-04-05 Yin ShiYuan

This paper proposes the application of particle swarm optimization (PSO) to the problem of finite element model (FEM) selection. This problem arises when a choice of the best model for a system has to be made from set of competing models,…

Artificial Intelligence · Computer Science 2009-10-13 Linda Mthembu , Tshilidzi Marwala , Michael I. Friswell , Sondipon Adhikari

Few-step diffusion models enable efficient high-resolution image synthesis but struggle to align with specific downstream objectives due to limitations of existing reinforcement learning (RL) methods in low-step regimes with limited state…

Machine Learning · Computer Science 2026-03-02 Ziyi Zhang , Li Shen , Sen Zhang , Deheng Ye , Yong Luo , Miaojing Shi , Dongjing Shan , Bo Du , Dacheng Tao

Neural prediction offers a promising approach to forecasting the individual variability of neurocognitive functions and disorders and providing prognostic indicators for personalized invention. However, it is challenging to translate neural…

Machine Learning · Computer Science 2025-12-02 Yanlin Wang , Nancy M Young , Patrick C M Wong

Evolutionary algorithms have been frequently used for dynamic optimization problems. With this paper, we contribute to the theoretical understanding of this research area. We present the first computational complexity analysis of…

Data Structures and Algorithms · Computer Science 2015-04-27 Frank Neumann , Carsten Witt

Rapid performance recovery from unforeseen environmental perturbations remains a grand challenge in swarm robotics. To solve this challenge, we investigate a behaviour adaptation approach, where one searches an archive of controllers for…

Robotics · Computer Science 2024-01-08 David M. Bossens , Danesh Tarapore

Energy demand has increased considerably with the growth of world population, increasing the interest in the hydrocarbon reservoir management problem. Companies are concerned with maximizing oil recovery while minimizing capital investment…

Optimization and Control · Mathematics 2015-04-28 Grazieli L. C. Carosio , Thomas D. Humphries , Ronald D. Haynes , Colin G. Farquharson

Particle Swarm Optimization (PSO) is a popular nature-inspired meta-heuristic for solving continuous optimization problems. Although this technique is widely used, the understanding of the mechanisms that make swarms so successful is still…

Neural and Evolutionary Computing · Computer Science 2014-09-02 Vanessa Lange , Manuel Schmitt , Rolf Wanka

This article presents Underdamped Particle Swarm Optimization (UEPS), a novel metaheuristic inspired by both the Particle Swarm Optimization (PSO) algorithm and the dynamic behavior of an underdamped system. The underdamped motion acts as…

Neural and Evolutionary Computing · Computer Science 2025-03-17 Matías Ezequiel Hernández Rodríguez

In this paper, an improved multimodal optimization (MMO) algorithm,called LSEPSO,has been proposed. LSEPSO combined Electrostatic Particle Swarm Optimization (EPSO) algorithm and a local search method and then made some modification on…

Artificial Intelligence · Computer Science 2014-10-09 Taymaz Rahkar-Farshi , Sara Behjat-Jamal , Mohammad-Reza Feizi-Derakhshi

Symbolic regression (SR) aims to discover mathematical expressions from data, a task traditionally tackled using Genetic Programming (GP) through combinatorial search over symbolic structures. Latent Space Optimization (LSO) methods use…

Neural and Evolutionary Computing · Computer Science 2026-04-14 Benjamin Léger , Kazem Meidani , Christian Gagné

Evolution equations, including both ordinary differential equations (ODEs) and partial differential equations (PDEs), play a pivotal role in modeling dynamic systems. However, achieving accurate long-time integration for these equations…

Numerical Analysis · Mathematics 2026-04-23 Xiaodong Feng , Haojiong Shangguan , Tao Tang , Xiaoliang Wan

As the acquisition cost of the graphics processing unit (GPU) has decreased, personal computers (PC) can handle optimization problems nowadays. In optimization computing, intelligent swarm algorithms (SIAs) method is suitable for…

Neural and Evolutionary Computing · Computer Science 2021-10-05 Wei-Chang Yeh , Zhenyao Liu , Shi-Yi Tan , Shang-Ke Huang

The neural ordinary differential equation (neural ODE) model has attracted increasing attention in time series analysis for its capability to process irregular time steps, i.e., data are not observed over equally-spaced time intervals. In…

Machine Learning · Computer Science 2021-07-23 Mingyuan Bai , S. T. Boris Choy , Junping Zhang , Junbin Gao

Various methods have been developed to analyze the association between organisms and their genomic sequences. Among them, sequence alignment is the most frequently used for comparative analysis of biological genomes. However, the…

Quantitative Methods · Quantitative Biology 2020-10-27 Yong Joon Song , Dong Jin Ji , Hye In Seo , Gyu Bum Han , Dong Ho Cho

Reliable global optimization is dedicated to finding a global minimum in the presence of rounding errors. The only approaches for achieving a numerical proof of global optimality are interval branch and bound methods that interleave…

Numerical Analysis · Mathematics 2020-01-31 Charlie Vanaret

Deep learning paradigms, such as PINNs and neural operators, have significantly advanced the solving of PDEs. However, they often struggle to capture the continuous integral nature of physical systems, relying either on pointwise residuals…

Machine Learning · Computer Science 2026-05-12 Hanru Bai , Yuncheng Zhou , Difan Zou