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In this paper, we introduce a novel and interpretable methodology to cluster subjects suffering from cancer, based on features extracted from their biopsies. Contrary to existing approaches, we propose here to capture complex patterns in…

Quantitative Methods · Quantitative Biology 2020-07-07 Yassine El Ouahidi , Matis Feller , Matthieu Talagas , Bastien Pasdeloup

Unsupervised clustering of temporal data is both challenging and crucial in machine learning. In this paper, we show that neither traditional clustering methods, time series specific or even deep learning-based alternatives generalise well…

Machine Learning · Computer Science 2020-10-13 Nuno Mota Goncalves , Ioana Giurgiu , Anika Schumann

Automatic detection and segmentation of cells and nuclei in microscopy images is important for many biological applications. Recent successful learning-based approaches include per-pixel cell segmentation with subsequent pixel grouping, or…

Computer Vision and Pattern Recognition · Computer Science 2018-11-09 Uwe Schmidt , Martin Weigert , Coleman Broaddus , Gene Myers

For the Bio+Med-Vis Challenge 2024, we propose a visual analytics system as a redesign for the scatter pie chart visualization of cell type proportions of spatial transcriptomics data. Our design uses three linked views: a view of the…

Human-Computer Interaction · Computer Science 2024-09-12 David Hägele , Yuxuan Tang , Daniel Weiskopf

With the recent popularity of graphical clustering methods, there has been an increased focus on the information between samples. We show how learning cluster structure using edge features naturally and simultaneously determines the most…

Machine Learning · Statistics 2016-05-09 Matt Barnes , Artur Dubrawski

Clustering is one of the major tasks in data mining. In the last few years, Clustering of spatial data has received a lot of research attention. Spatial databases are components of many advanced information systems like geographic…

Databases · Computer Science 2012-06-04 Mohamed A. El-Zawawy

Parallel coordinates plot (PCP) is an excellent tool for multivariate visualization and analysis, but it may fail to reveal inherent structures for datasets with a large number of items. In this paper, we propose a suite of novel…

Graphics · Computer Science 2013-11-05 Xin Zhao , Bo Li

We derive an efficient method to perform clustering of nodes in Gaussian graphical models directly from sample data. Nodes are clustered based on the similarity of their network neighborhoods, with edge weights defined by partial…

Machine Learning · Computer Science 2019-10-08 Keith Dillon

We propose a new information aggregation method which called Localized Feature Aggregation Module based on the similarity between the feature maps of an encoder and a decoder. The proposed method recovers positional information by…

Image and Video Processing · Electrical Eng. & Systems 2021-12-06 Ryouichi Furukawa , Kazuhiro Hotta

In this paper, we investigate the use of an unsupervised label clustering technique and demonstrate that it enables substantial improvements in visual relationship prediction accuracy on the Person in Context (PIC) dataset. We propose to…

Computer Vision and Pattern Recognition · Computer Science 2018-09-11 Hsuan-Kung Yang , An-Chieh Cheng , Kuan-Wei Ho , Tsu-Jui Fu , Chun-Yi Lee

Deep clustering which adopts deep neural networks to obtain optimal representations for clustering has been widely studied recently. In this paper, we propose a novel deep image clustering framework to learn a category-style latent…

Computer Vision and Pattern Recognition · Computer Science 2020-07-21 Junjie Zhao , Donghuan Lu , Kai Ma , Yu Zhang , Yefeng Zheng

We propose a novel agglomerative clustering method based on unmasking, a technique that was previously used for authorship verification of text documents and for abnormal event detection in videos. In order to join two clusters, we…

Computer Vision and Pattern Recognition · Computer Science 2019-05-03 Mariana-Iuliana Georgescu , Radu Tudor Ionescu

Large datasets with interactions between objects are common to numerous scientific fields (i.e. social science, internet, biology...). The interactions naturally define a graph and a common way to explore or summarize such dataset is graph…

Applications · Statistics 2009-10-13 Hugo Zanghi , Stevenn Volant , Christophe Ambroise

We present a technique for clustering categorical data by generating many dissimilarity matrices and averaging over them. We begin by demonstrating our technique on low dimensional categorical data and comparing it to several other…

Machine Learning · Statistics 2017-09-20 Saeid Amiri , Bertrand Clarke , Jennifer Clarke

Most tabular data visualization techniques focus on overviews, yet many practical analysis tasks are concerned with investigating individual items of interest. At the same time, relating an item to the rest of a potentially large table is…

Human-Computer Interaction · Computer Science 2019-11-28 Katarina Furmanova , Samuel Gratzl , Holger Stitz , Thomas Zichner , Miroslava Jaresova , Alexander Lex , Marc Streit

This paper introduces {\em fusion subspace clustering}, a novel method to learn low-dimensional structures that approximate large scale yet highly incomplete data. The main idea is to assign each datum to a subspace of its own, and minimize…

Machine Learning · Computer Science 2022-05-24 Usman Mahmood , Daniel Pimentel-Alarcón

This paper extends a spreadsheet visualization technique by using layout information. The original approach identifies logically or semantically related cells by relying exclusively on the content of cells for identifying semantic classes.…

Human-Computer Interaction · Computer Science 2008-03-10 Sabine Hipfl

This paper presents a method that improve state-of-the-art of the concave point detection methods as a first step to segment overlapping objects on images. It is based on the analysis of the curvature of the objects contour. The method has…

Computer Vision and Pattern Recognition · Computer Science 2022-01-11 Miquel Miró-Nicolau , Biel Moyà-Alcover , Manuel Gonzàlez-Hidalgo , Antoni Jaume-i-Capó

In this paper, we develop a method for unsupervised clustering of two-way (matrix) data by combining two recent innovations from different fields: the Sparse Subspace Clustering (SSC) algorithm [10], which groups points coming from a union…

Machine Learning · Computer Science 2015-02-24 Eric Kernfeld , Shuchin Aeron , Misha Kilmer

We propose a new approach for clustering DNA features using array CGH data from multiple tumor samples. We distinguish data-collapsing: joining contiguous DNA clones or probes with extremely similar data into regions, from clustering:…

Applications · Statistics 2010-12-21 Kyung In Kim , Etienne Roquain , Mark Van De Wiel