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Protein representation learning is critical in various tasks in biology, such as drug design and protein structure or function prediction, which has primarily benefited from protein language models and graph neural networks. These models…

Biomolecules · Quantitative Biology 2024-02-16 Bozhen Hu , Zelin Zang , Cheng Tan , Stan Z. Li

Implicit graph neural networks have gained popularity in recent years as they capture long-range dependencies while improving predictive performance in static graphs. Despite the tussle between performance degradation due to the…

Machine Learning · Computer Science 2024-06-27 Yongjian Zhong , Hieu Vu , Tianbao Yang , Bijaya Adhikari

Coflow is a recently proposed networking abstraction to help improve the communication performance of data-parallel computing jobs. In multi-stage jobs, each job consists of multiple coflows and is represented by a Directed Acyclic Graph…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-22 Xin Wang , Hong Shen

Conventional route planning services typically offer the same routes to all drivers, focusing primarily on a few standardized factors such as travel distance or time, overlooking individual driver preferences. With the inception of…

Artificial Intelligence · Computer Science 2024-07-26 Dinesh Cyril Selvaraj , Falko Dressler , Carla Fabiana Chiasserini

Recent works on representation learning for graph structured data predominantly focus on learning distributed representations of graph substructures such as nodes and subgraphs. However, many graph analytics tasks such as graph…

Artificial Intelligence · Computer Science 2017-07-18 Annamalai Narayanan , Mahinthan Chandramohan , Rajasekar Venkatesan , Lihui Chen , Yang Liu , Shantanu Jaiswal

Graph representation plays an important role in the field of financial risk control, where the relationship among users can be constructed in a graph manner. In practical scenarios, the relationships between nodes in risk control tasks are…

Machine Learning · Computer Science 2023-03-08 Jiafu Wu , Mufeng Yao , Dong Wu , Mingmin Chi , Baokun Wang , Ruofan Wu , Xin Fu , Changhua Meng , Weiqiang Wang

The Deep Graph Library (DGL) was designed as a tool to enable structure learning from graphs, by supporting a core abstraction for graphs, including the popular Graph Neural Networks (GNN). DGL contains implementations of all core graph…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-07-14 Sasikanth Avancha , Vasimuddin Md , Sanchit Misra , Ramanarayan Mohanty

An efficient and reliable multi-agent decision-making system is highly demanded for the safe and efficient operation of connected autonomous vehicles in intelligent transportation systems. Current researches mainly focus on the Deep…

Robotics · Computer Science 2022-02-01 Qi Liu , Zirui Li , Xueyuan Li , Jingda Wu , Shihua Yuan

The increasing scale of alternating current and direct current (AC/DC) hybrid systems necessitates a faster power flow analysis tool than ever. This letter thus proposes a specific physics-guided graph neural network (PG-GNN). The tailored…

Systems and Control · Electrical Eng. & Systems 2023-05-02 Mei Yang , Gao Qiu , Yong Wu , Junyong Liu , Nina Dai , Yue Shui , Kai Liu , Lijie Ding

Representation learning on text-attributed graphs (TAGs) has attracted significant interest due to its wide-ranging real-world applications, particularly through Graph Neural Networks (GNNs). Traditional GNN methods focus on encoding the…

Machine Learning · Computer Science 2024-10-07 Xingyu Ji , Jiale Liu , Lu Li , Maojun Wang , Zeyu Zhang

Graph Neural Networks (GNNs) are currently dominating in modeling graph-structure data, while their high reliance on graph structure for inference significantly impedes them from widespread applications. By contrast, Graph-regularized MLPs…

Real-world dynamic graphs are often directed, with source and destination nodes exhibiting asymmetrical behavioral patterns and temporal dynamics. However, existing dynamic graph architectures largely rely on shared parameters for…

Machine Learning · Computer Science 2026-02-27 Tyler Bonnet , Marek Rei

While GPUs are responsible for training the vast majority of state-of-the-art deep learning models, the implications of their architecture are often overlooked when designing new deep learning (DL) models. As a consequence, modifying a DL…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-02-01 Quentin Anthony , Jacob Hatef , Deepak Narayanan , Stella Biderman , Stas Bekman , Junqi Yin , Aamir Shafi , Hari Subramoni , Dhabaleswar Panda

Graph Neural Networks (GNNs) are a framework for graph representation learning, where a model learns to generate low dimensional node embeddings that encapsulate structural and feature-related information. GNNs are usually trained in an…

Machine Learning · Computer Science 2020-12-15 Davide Buffelli , Fabio Vandin

Recognizing multiple labels of images is a practical and challenging task, and significant progress has been made by searching semantic-aware regions and modeling label dependency. However, current methods cannot locate the semantic regions…

Computer Vision and Pattern Recognition · Computer Science 2019-08-21 Tianshui Chen , Muxin Xu , Xiaolu Hui , Hefeng Wu , Liang Lin

Link prediction on graphs is a fundamental problem. Subgraph representation learning approaches (SGRLs), by transforming link prediction to graph classification on the subgraphs around the links, have achieved state-of-the-art performance…

Machine Learning · Computer Science 2024-10-21 Paul Louis , Shweta Ann Jacob , Amirali Salehi-Abari

In the domain of dynamic graph representation learning (DGRL), the efficient and comprehensive capture of temporal evolution within real-world networks is crucial. Spiking Neural Networks (SNNs), known as their temporal dynamics and…

Neural and Evolutionary Computing · Computer Science 2024-04-12 Dong Chen , Shuai Zheng , Muhao Xu , Zhenfeng Zhu , Yao Zhao

Link prediction is a fundamental task in dynamic graph learning (DGL), inherently shaped by the topology of the DG. Recent advancements in dynamic graph neural networks (DGNN), primarily by modeling the relationships among nodes via a…

Machine Learning · Computer Science 2025-04-29 Ling Wang , Minglian Han

The resilience of critical infrastructure networks (CINs) after disruptions, such as those caused by natural hazards, depends on both the speed of restoration and the extent to which operational functionality can be regained. Allocating…

Machine Learning · Computer Science 2025-07-14 Nathan Maurer , Harshal Kaushik , Roshni Anna Jacob , Jie Zhang , Souma Chowdhury

Deep reinforcement learning (DRL) has been widely used in many important tasks of communication networks. In order to improve the perception ability of DRL on the network, some studies have combined graph neural networks (GNNs) with DRL,…

Cryptography and Security · Computer Science 2025-01-22 Xuzeng Li , Tao Zhang , Jian Wang , Zhen Han , Jiqiang Liu , Jiawen Kang , Dusit Niyato , Abbas Jamalipour
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