English
Related papers

Related papers: Structural Reasoning Improves Molecular Understand…

200 papers

Several machine learning methods aim to learn or reason about complex physical systems. A common first-step towards reasoning is to infer system parameters from observations of its behavior. In this paper, we investigate the performance of…

Computation and Language · Computer Science 2024-02-07 Sean Memery , Mirella Lapata , Kartic Subr

Proteins adopt multiple structural conformations to perform their diverse biological functions, and understanding these conformations is crucial for advancing drug discovery. Traditional physics-based simulation methods often struggle with…

Biomolecules · Quantitative Biology 2025-03-14 Jiarui Lu , Xiaoyin Chen , Stephen Zhewen Lu , Chence Shi , Hongyu Guo , Yoshua Bengio , Jian Tang

Large Language Models (LLMs) have not only exhibited exceptional performance across various tasks, but also demonstrated sparks of intelligence. Recent studies have focused on assessing their capabilities on human exams and revealed their…

Computation and Language · Computer Science 2023-10-19 Zheyuan Zhang , Jifan Yu , Juanzi Li , Lei Hou

Large language models (LLMs) increasingly exhibit human-like patterns of pragmatic and social reasoning. This paper addresses two related questions: do LLMs approximate human social meaning not only qualitatively but also quantitatively,…

Computation and Language · Computer Science 2026-04-06 Roland Mühlenbernd

Large language models (LLMs) have proven to be highly effective for solving complex reasoning tasks. Surprisingly, their capabilities can often be improved by iterating on previously generated solutions. In this context, a reasoning plan…

Artificial Intelligence · Computer Science 2025-12-05 MohammadHossein Bateni , Vincent Cohen-Addad , Yuzhou Gu , Silvio Lattanzi , Simon Meierhans , Christopher Mohri

The reasoning capabilities of Large Language Models (LLMs) are increasingly attributed to training data quality rather than mere parameter scaling. However, existing data-centric paradigms often equate quality with factuality or diversity…

Artificial Intelligence · Computer Science 2026-02-13 Zhen Bi , Zhenlin Hu , Xueshu Chen , Mingyang Chen , Cheng Deng , Yida Xue , Zhen Wang , Qing Shen , Ningyu Zhang , Jungang Lou

The effective utilization of structured data, integral to corporate data strategies, has been challenged by the rise of large language models (LLMs) capable of processing unstructured information. This shift prompts the question: can LLMs…

Computation and Language · Computer Science 2024-10-22 Zhouhong Gu , Haoning Ye , Xingzhou Chen , Zeyang Zhou , Hongwei Feng , Yanghua Xiao

Large language models (LLMs) have advanced general-purpose reasoning, showing strong performance across diverse tasks. However, existing methods often rely on implicit exploration, where the model follows stochastic and unguided reasoning…

Artificial Intelligence · Computer Science 2025-09-09 Jiaxiang Chen , Zhuo Wang , Mingxi Zou , Zhucong Li , Zhijian Zhou , Song Wang , Zenglin Xu

Large language models (LLMs) have developed impressive performance and strong explainability across various reasoning scenarios, marking a significant stride towards mimicking human-like intelligence. Despite this, when tasked with several…

Computation and Language · Computer Science 2024-11-12 Kai Xiong , Xiao Ding , Ting Liu , Bing Qin , Dongliang Xu , Qing Yang , Hongtao Liu , Yixin Cao

Large Language Models (LLMs) have demonstrated remarkable capabilities in various reasoning and generation tasks. However, their proficiency in complex causal reasoning, discovery, and estimation remains an area of active development, often…

Artificial Intelligence · Computer Science 2025-09-03 Adib Bazgir , Amir Habibdoust , Yuwen Zhang , Xing Song

Large language models (LLMs) have led to breakthroughs in language tasks, yet the internal mechanisms that enable their remarkable generalization and reasoning abilities remain opaque. This lack of transparency presents challenges such as…

Computation and Language · Computer Science 2024-04-17 Haiyan Zhao , Fan Yang , Bo Shen , Himabindu Lakkaraju , Mengnan Du

Evaluating multimodal large language models (MLLMs) is fundamentally challenged by the absence of structured, interpretable, and theoretically grounded benchmarks; current heuristically-grouped tasks have vague cognitive targets,…

Computation and Language · Computer Science 2025-11-14 Shengwu. Xiong , Tianyu. Zou , Cong. Wang , Xuelong Li

Large Language Models (LLMs), despite their remarkable capabilities, rely on singular, pre-dominant reasoning paradigms, hindering their performance on intricate problems that demand diverse cognitive strategies. To address this, we…

Computation and Language · Computer Science 2025-09-29 Zishan Ahmad , Saisubramaniam Gopalakrishnan

Numerous benchmarks aim to evaluate the capabilities of Large Language Models (LLMs) for causal inference and reasoning. However, many of them can likely be solved through the retrieval of domain knowledge, questioning whether they achieve…

Machine Learning · Computer Science 2024-07-12 Linying Yang , Vik Shirvaikar , Oscar Clivio , Fabian Falck

This paper demonstrates that language models are strong structure-based protein designers. We present LM-Design, a generic approach to reprogramming sequence-based protein language models (pLMs), that have learned massive sequential…

Machine Learning · Computer Science 2023-02-10 Zaixiang Zheng , Yifan Deng , Dongyu Xue , Yi Zhou , Fei YE , Quanquan Gu

Speech understanding is essential for interpreting the diverse forms of information embedded in spoken language, including linguistic, paralinguistic, and non-linguistic cues that are vital for effective human-computer interaction. The…

Audio and Speech Processing · Electrical Eng. & Systems 2025-12-08 Jing Peng , Yucheng Wang , Bohan Li , Yiwei Guo , Hankun Wang , Yangui Fang , Yu Xi , Haoyu Li , Xu Li , Ke Zhang , Shuai Wang , Kai Yu

In recent years, multimodal large language models (MLLMs) have achieved significant breakthroughs, enhancing understanding across text and vision. However, current MLLMs still face challenges in effectively integrating knowledge across…

Computation and Language · Computer Science 2025-03-10 Boyu Jia , Junzhe Zhang , Huixuan Zhang , Xiaojun Wan

Design Structure Matrix (DSM) modularization, the task of partitioning system elements into cohesive modules, is a fundamental combinatorial challenge in engineering design. Traditional methods treat modularization as a pure graph…

Computational Engineering, Finance, and Science · Computer Science 2026-05-01 Shuo Jiang , Jianxi Luo

With the rapid development of online services, recommender systems (RS) have become increasingly indispensable for mitigating information overload. Despite remarkable progress, conventional recommendation models (CRM) still have some…

Information Retrieval · Computer Science 2024-07-10 Jianghao Lin , Xinyi Dai , Yunjia Xi , Weiwen Liu , Bo Chen , Hao Zhang , Yong Liu , Chuhan Wu , Xiangyang Li , Chenxu Zhu , Huifeng Guo , Yong Yu , Ruiming Tang , Weinan Zhang

Machine reading comprehension (MRC) aims to teach machines to read and comprehend human languages, which is a long-standing goal of natural language processing (NLP). With the burst of deep neural networks and the evolution of…

Computation and Language · Computer Science 2020-05-14 Zhuosheng Zhang , Hai Zhao , Rui Wang