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A model of $s$ interacting species is considered with two types of dynamical variables. The fast variables are the populations of the species and slow variables the links of a directed graph that defines the catalytic interactions among…

adap-org · Physics 2009-10-30 Sanjay Jain , Sandeep Krishna

This study introduces a novel theoretical framework, the Stacked Autoencoder Evolution Hypothesis, which proposes that biological evolutionary systems operate through multi-layered self-encoding and decoding processes, analogous to stacked…

Neural and Evolutionary Computing · Computer Science 2026-02-03 Hiroyuki Iizuka

Drawing on the idea that brain development is a Darwinian process of ``evolution + selection'' and the idea that the current state is a local equilibrium state of many bodies with self-organization and evolution processes driven by the…

Neural and Evolutionary Computing · Computer Science 2020-06-16 Ping Guo , Qian Yin

Collective systems that self-organise to maximise the group's ability to collect and distribute information can be successful in environments with high spatial and temporal variation. Such organisations are abundant in nature, as sharing…

Populations and Evolution · Quantitative Biology 2025-10-28 R. S. Walker , G. Ramos-Fernandez , D. Boyer , S. E. Smith-Aguilar , X. O'Neill , M. J. Silk

Autocatalytic sets are sets of entities that mutually catalyse each other's production through chemical reactions from a basic food source. Recently, the reflexively autocatalytic and food generated theory has introduced a formal definition…

Adaptation and Self-Organizing Systems · Physics 2020-09-15 Alessandro Ravoni

Autocatalytic Sets are reaction networks theorised as networks at the basis of life. Their main feature is the ability of spontaneously emerging and self-reproducing. The Reflexively and Food-generated theory provides a formal definition of…

Molecular Networks · Quantitative Biology 2020-10-19 Alessandro Ravoni

Collective temporal organization in complex systems is commonly attributed to synchronization, resonance, or proximity to dynamical instabilities. Here we identify a distinct mechanism by which coherent, synchronization-like behavior can…

Adaptation and Self-Organizing Systems · Physics 2026-03-10 V. Troude , D. Sornette

A self-adaptive system can modify its own structure and behavior at runtime based on its perception of the environment, of itself and of its requirements. To develop a self-adaptive system, software developers codify knowledge about the…

Software Engineering · Computer Science 2022-10-13 Andreas Metzger , Clément Quinton , Zoltán Ádám Mann , Luciano Baresi , Klaus Pohl

Unravelling current complex food systems is relevant for their adjustment and redesign under the current changing climate conditions. Redesign may be necessitated by migration of people and changes of locations of major agri-food…

Physics and Society · Physics 2026-04-15 Erik van der Linden , Marcel Meinders , Egbert H. van Nes , Hugo de Vries

We present a general conceptual framework for self-organized criticality (SOC), based on the recognition that it is nothing but the expression, ''unfolded'' in a suitable parameter space, of an underlying {\em unstable} dynamical critical…

adap-org · Physics 2009-10-22 Didier Sornette , Anders Johansen , Ivan Dornic

Humans and animals show remarkable flexibility in adjusting their behaviour when their goals, or rewards in the environment change. While such flexibility is a hallmark of intelligent behaviour, these multi-task scenarios remain an…

Artificial Intelligence · Computer Science 2020-01-13 Tamas J. Madarasz

Social institutions are systems of shared norms and rules that regulate people's behaviors, often emerging without external enforcement. They provide criteria to distinguish cooperation from defection and establish rules to sustain…

Physics and Society · Physics 2025-04-15 Kenji Itao , Kunihiko Kaneko

The relation between a structure and the function running on that structure is of central interest in many fields, including computer science, biology (organ vs. function), psychology (body vs. mind), architecture (designs vs.…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-01-16 Ciprian Ionut Paduraru , Gheorghe Stefanescu

Building self-adaptive and self-organizing (SASO) systems is a challenging problem, in part because SASO principles are not yet well understood and few platforms exist for exploring them. Cellular automata (CA) are a well-studied approach…

Neural and Evolutionary Computing · Computer Science 2014-05-20 David B. Knoester , Heather J. Goldsby , Christoph Adami

Repeat proteins are made with tandem copies of similar amino acid stretches that fold into elongated architectures. Due to their symmetry, these proteins constitute excellent model systems to investigate how evolution relates to structure,…

Biomolecules · Quantitative Biology 2022-10-12 Ezequiel A. Galpern , Jacopo Marchi , Thierry Mora , Aleksandra M. Walczak , Diego U. Ferreiro

Collective adaptive systems are an emerging class of networked computational systems, particularly suited in application domains such as smart cities, complex sensor networks, and the Internet of Things. These systems tend to feature large…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-11-23 Mirko Viroli , Giorgio Audrito , Jacob Beal , Ferruccio Damiani , Danilo Pianini

Self-organization is a process where a stable pattern is formed by the cooperative behavior between parts of an initially disordered system without external control or influence. It has been introduced to multi-agent systems as an internal…

Artificial Intelligence · Computer Science 2021-05-27 Jieting Luo , Beishui Liao , John-Jules Meyer

Recent advances in autoregressive (AR) generative models have produced increasingly powerful systems for media synthesis. Among them, next-scale prediction has emerged as a popular paradigm, where models generate images in a coarse-to-fine…

Computer Vision and Pattern Recognition · Computer Science 2025-12-09 Gengze Zhou , Chongjian Ge , Hao Tan , Feng Liu , Yicong Hong

One of the most intriguing questions in evolution is how organisms exhibit suitable phenotypic variation to rapidly adapt in novel selective environments which is crucial for evolvability. Recent work showed that when selective environments…

Populations and Evolution · Quantitative Biology 2015-08-28 Kostas Kouvaris , Jeff Clune , Louis Kounios , Markus Brede , Richard A. Watson

Many organisms live in populations structured by space and by class, exhibit plastic responses to their social partners, and are subject to non-additive ecological and fitness effects. Social evolution theory has long recognized that all of…

Populations and Evolution · Quantitative Biology 2014-04-24 Jeremy Van Cleve , Erol Akçay