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Natural selection successfully explains how organisms accumulate adaptive change despite that traits acquired over a lifetime are eliminated at the end of each generation. However, in some domains that exhibit cumulative, adaptive change --…

Populations and Evolution · Quantitative Biology 2024-10-03 Liane Gabora , Mike Steel

In lieu of an abstract here is the first paragraph: No other species remotely approaches the human capacity for the cultural evolution of novelty that is accumulative, adaptive, and open-ended (i.e., with no a priori limit on the size or…

Neurons and Cognition · Quantitative Biology 2021-07-22 Liane Gabora , Cameron M. Smith

Self-organization is the autonomous assembly of a network of interacting components into a stable, organized pattern. This article shows that the process of self-assembly can be encoded in terms of evolutionary entropy, a statistical…

Statistical Mechanics · Physics 2023-05-29 Lloyd A. Demetrius

The improbability of a spontaneously generated self-assembling molecule has suggested that life began with a set of simpler, collectively replicating elements, such as an enclosed autocatalytic set of polymers (or protocell). Since…

Adaptation and Self-Organizing Systems · Physics 2013-08-26 Liane Gabora

The emergence of an autocatalytic network from an available set of elements is a fundamental step in early evolutionary processes, such as the origin of metabolism. Given a set of elements, the reactions between them (chemical or…

Molecular Networks · Quantitative Biology 2023-08-30 Mike Steel

Two alternative views of an economy are combined and studied. The first view is that of technological evolution as a process of combinatorial innovation. Recently a simple mathematical model (TAP) was introduced to study such a…

Molecular Networks · Quantitative Biology 2022-04-13 Wim Hordijk , Stuart Kauffman

Evolution produces complex and structured networks of interacting components in chemical, biological, and social systems. We describe a simple mathematical model for the evolution of an idealized chemical system to study how a network of…

Adaptation and Self-Organizing Systems · Physics 2014-03-05 Sanjay Jain , Sandeep Krishna

Dawkins' replicator-based conception of evolution has led to widespread mis-application selectionism across the social sciences because it does not address the paradox that inspired the theory of natural selection in the first place: how do…

Populations and Evolution · Quantitative Biology 2019-07-02 Liane Gabora

Self-organized criticality (SOC) is widely proposed as a fundamental mechanism for collective behavior, yet its role in objective-driven, heterogeneous adaptive systems underpinning real complex systems remains less understood. We introduce…

Adaptation and Self-Organizing Systems · Physics 2026-04-20 Nixie Sapphira Lesmana , Ling Feng , Kan Chen , Choy Heng Lai

Current analyses of genomes from numerous species show that the diversity of organism's functional and behavioral characters is not proportional to the number of genes that encode the organism. We investigate the hypothesis that the…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Olof Goernerup , James P. Crutchfield

Federated Learning (FL) faces significant challenges in evolving environments, particularly regarding data heterogeneity and the rigidity of fixed network topologies. To address these issues, this paper proposes \textbf{SOFA-FL}…

Machine Learning · Computer Science 2025-12-10 Yi Ni , Xinkun Wang , Han Zhang

We study open-ended evolution by focusing on computational and information-processing dynamics underlying major evolutionary transitions. In doing so, we consider biological organisms as hierarchical dynamical systems that generate…

There has been a long debate on how new levels of organization have evolved. It might seem unlikely, as cooperation must prevail over competition. One well-studied example is the emergence of autocatalytic sets, which seem to be a…

Populations and Evolution · Quantitative Biology 2026-02-16 Sean P. Maley , Carlos Gershenson , Stuart A. Kauffman

A general and basic model of primordial evolution--a soup of reacting finitary and discrete processes--is employed to identify and analyze fundamental mechanisms that generate and maintain complex structures in prebiotic systems. The…

Populations and Evolution · Quantitative Biology 2016-11-23 Olof Gornerup , James P. Crutchfield

The Self-Optimal-Transport (SOT) feature transform is designed to upgrade the set of features of a data instance to facilitate downstream matching or grouping related tasks. The transformed set encodes a rich representation of high order…

Computer Vision and Pattern Recognition · Computer Science 2022-04-08 Daniel Shalam , Simon Korman

Complex change is often described as "evolutionary" in economics, policy, and technology, yet most system dynamics models remain constrained to fixed state spaces and equilibrium-seeking behavior. This paper argues that evolutionary…

Populations and Evolution · Quantitative Biology 2026-02-19 Dan Adler

A universal feature of the biochemistry of any living system is that all the molecules and catalysts that are required for reactions of the system can be built up from an available food source by repeated application of reactions from…

Molecular Networks · Quantitative Biology 2013-07-11 Wim Hordijk , Peter R. Wills , Mike Steel

Self-organized criticality (SOC) refers to the ability of complex systems to evolve towards a 2nd-order phase transition at which interactions between system components lead to scale-invariant events beneficial for system performance. For…

Neurons and Cognition · Quantitative Biology 2021-05-18 Dietmar Plenz , Tiago L. Ribeiro , Stephanie R. Miller , Patrick A. Kells , Ali Vakili , Elliott L. Capek

Adaptive network is a powerful presentation to describe different real-world phenomena. However, current models often neglect higher-order interactions (beyond pairwise interactions) and diverse adaptation types (cooperative and…

Adaptation and Self-Organizing Systems · Physics 2025-01-24 S. Nirmala Jenifer , Dibakar Ghosh , Paulsamy Muruganandam

Self-sustaining autocatalytic networks play a central role in living systems, from metabolism at the origin of life, simple RNA networks, and the modern cell, to ecology and cognition. A collectively autocatalytic network that can be…

Molecular Networks · Quantitative Biology 2018-03-29 Mike Steel , Wim Hordijk
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