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Accurate and efficient prediction of the molecular properties of drugs is one of the fundamental problems in drug research and development. Recent advancements in representation learning have been shown to greatly improve the performance of…

Biomolecules · Quantitative Biology 2022-06-17 Hui Liu , Yibiao Huang , Xuejun Liu , Lei Deng

We extend the entropy stable high order nodal discontinuous Galerkin spectral element approximation for the non-linear two dimensional shallow water equations presented by Wintermeyer et al. [N. Wintermeyer, A. R. Winters, G. J. Gassner,…

Numerical Analysis · Mathematics 2018-09-26 Niklas Wintermeyer , Andrew R. Winters , Gregor J. Gassner , Timothy Warburton

Augmentation techniques and sampling strategies are crucial in contrastive learning, but in most existing works, augmentation techniques require careful design, and their sampling strategies can only capture a small amount of intrinsic…

Machine Learning · Computer Science 2023-07-28 Yixian Ma , Kun Zhan

A network of independently trained Gaussian processes (StackedGP) is introduced to obtain predictions of quantities of interest with quantified uncertainties. The main applications of the StackedGP framework are to integrate different…

Machine Learning · Computer Science 2017-06-20 Kareem Abdelfatah , Junshu Bao , Gabriel Terejanu

The $E$-optimality criterion for a regression model maximizes the smallest eigenvalue of the information matrix and becomes non-differentiable when this eigenvalue has multiplicity greater than one. Working in the $2$-Wasserstein space, we…

Optimization and Control · Mathematics 2026-04-17 Jieling Shi , Kim-Chuan Toh , Xin T. Tong , Weng Kee Wong

We present an approach to calculate the optical absorption spectra that combines the quasiparticle self-consistent GW method [Phys. Rev. B, 76 165106 (2007)] for the electronic structure with the solution of the ladder approximation to the…

Materials Science · Physics 2018-03-21 Brian Cunningham , Pooya Azarhoosh , Dimitar Pashov , Myrta Gruening , Mark van Schilfgaarde

Thermal transport in complex solids is governed by local structure, defects, and anisotropy, yet most continuum models still rely on oversimplified, homogenized conductivities. Here, we bridge atomistic and continuum descriptions by…

Materials Science · Physics 2026-02-27 C. Ugwumadu , D. A. Drabold , R. M. Tutchton

High-throughput DFT calculations are key to screening existing/novel materials, sampling potential energy surfaces, and generating quantum mechanical data for machine learning. By including a fraction of exact exchange (EXX), hybrid…

Contemporary graph learning algorithms are not well-defined for large molecules since they do not consider the hierarchical interactions among the atoms, which are essential to determine the molecular properties of macromolecules. In this…

Machine Learning · Computer Science 2023-08-02 Nhat Khang Ngo , Truong Son Hy , Risi Kondor

Power flow estimation plays a vital role in ensuring the stability and reliability of electrical power systems, particularly in the context of growing network complexities and renewable energy integration. However, existing studies often…

Machine Learning · Computer Science 2025-05-20 Zhen Zhao , Wenqi Huang , Zicheng Wang , Jiaxuan Hou , Peng Li , Lei Bai

We present a novel approach for solving the shallow water equations using a discontinuous Galerkin spectral element method. The method we propose has three main features. First, it enjoys a discrete well-balanced property, in a spirit…

Numerical Analysis · Mathematics 2023-09-15 Yogiraj Mantri , Philipp Öffner , Mario Ricchiuto

The static energy encodes all possible information about the thermodynamics and potential energy (and all related forces) of stratified geophysical fluids. In this paper, we develop a systematic methodology, called static energy…

Fluid Dynamics · Physics 2024-01-25 Remi Tailleux , Thomas Dubos

Transfer entropy (TE) is an information theoretic measure that reveals the directional flow of information between processes, providing valuable insights for a wide range of real-world applications. This work proposes Transfer Entropy…

Information Theory · Computer Science 2025-07-22 Omer Luxembourg , Dor Tsur , Haim Permuter

We present a novel machine learning approach for data assimilation applied in fluid mechanics, based on adjoint-optimization augmented by Graph Neural Networks (GNNs) models. We consider as baseline the Reynolds-Averaged Navier-Stokes…

We present a high-order entropy stable discontinuous Galerkin (ESDG) method for the two dimensional shallow water equations (SWE) on curved triangular meshes. The presented scheme preserves a semi-discrete entropy inequality and remains…

Numerical Analysis · Mathematics 2020-10-16 Xinhui Wu , Jesse Chan , Ethan Kubatko

Positron emission tomography (PET) is a widely used, highly sensitive molecular imaging in clinical diagnosis. There is interest in reducing the radiation exposure from PET but also maintaining adequate image quality. Recent methods using…

Image and Video Processing · Electrical Eng. & Systems 2024-10-28 Yuxin Xue , Lei Bi , Yige Peng , Michael Fulham , David Dagan Feng , Jinman Kim

Atmospheric water harvesting is urgently needed given increasing global water scarcity. Current sorbent-based devices that cycle between water capture and release have low harvesting rates. We envision a radically different multi-material…

The recent exploding growth in size of state-of-the-art machine learning models highlights a well-known issue where exponential parameter growth, which has grown to trillions as in the case of the Generative Pre-trained Transformer (GPT),…

Quantum Physics · Physics 2025-02-06 Ethan N. Evans , Matthew Cook , Zachary P. Bradshaw , Margarite L. LaBorde

Electron density $\rho(\vec{r})$ is the fundamental variable in the calculation of ground state energy with density functional theory (DFT). Beyond total energy, features and changes in $\rho(\vec{r})$ distributions are often used to…

Computational Physics · Physics 2022-08-30 Peter Bjørn Jørgensen , Arghya Bhowmik

One of the most appealing aspects of machine learning for material design is its high throughput exploration of chemical spaces, but to reach the ceiling of ML-aided exploration, more than current model architectures and processing…