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Medical entity extraction (EE) is a standard procedure used as a first stage in medical texts processing. Usually Medical EE is a two-step process: named entity recognition (NER) and named entity normalization (NEN). We propose a novel…
Electronic Health Records (EHRs) hold immense potential for advancing healthcare, offering rich, longitudinal data that combines structured information with valuable insights from unstructured clinical notes. However, the unstructured…
Document-level Relation Extraction (DocRE) aims to identify relationships between entity pairs within a document. However, most existing methods assume a uniform label distribution, resulting in suboptimal performance on real-world,…
Visual information extraction (VIE), which aims to simultaneously perform OCR and information extraction in a unified framework, has drawn increasing attention due to its essential role in various applications like understanding receipts,…
Nature has inspired various ground-breaking technological developments in applications ranging from robotics to aerospace engineering and the manufacturing of medical devices. However, accessing the information captured in scientific…
Digital libraries that maintain extensive textual collections may want to further enrich their content for certain downstream applications, e.g., building knowledge graphs, semantic enrichment of documents, or implementing novel access…
The rapidly expanding corpus of medical research literature presents major challenges in the understanding of previous work, the extraction of maximum information from collected data, and the identification of promising research directions.…
Bibliographic analysis considers author's research areas, the citation network and paper content among other things. In this paper, we combine these three in a topic model that produces a bibliographic model of authors, topics and documents…
Medical researchers and clinicians often need to perform novel segmentation tasks on a set of related images. Existing methods for segmenting a new dataset are either interactive, requiring substantial human effort for each image, or…
Document-level information extraction (IE) tasks have recently begun to be revisited in earnest using the end-to-end neural network techniques that have been successful on their sentence-level IE counterparts. Evaluation of the approaches,…
The knowledge contained in academic literature is interesting to mine. Inspired by the idea of molecular markers tracing in the field of biochemistry, three named entities, namely, methods, datasets and metrics are used as AI markers for AI…
Claims are a fundamental unit of scientific discourse. The exponential growth in the number of scientific publications makes automatic claim extraction an important problem for researchers who are overwhelmed by this information overload.…
The automation of document processing is gaining recent attention due to the great potential to reduce manual work through improved methods and hardware. Neural networks have been successfully applied before - even though they have been…
Multimodal retrieval has emerged as a promising yet challenging research direction in recent years. Most existing studies in multimodal retrieval focus on capturing information in multimodal data that is similar to their paired texts, but…
Large Language Models (LLMs) demonstrate exceptional performance in textual understanding and tabular reasoning tasks. However, their ability to comprehend and analyze hybrid text, containing textual and tabular data, remains unexplored.…
International Classification of Diseases (ICD) is a set of classification codes for medical records. Automated ICD coding, which assigns unique International Classification of Diseases codes with each medical record, is widely used recently…
Deep learning has led to state-of-the-art results for many medical imaging tasks, such as segmentation of different anatomical structures. With the increased numbers of deep learning publications and openly available code, the approach to…
Collections of research article data harvested from the web have become common recently since they are important resources for experimenting on tasks such as named entity recognition, text summarization, or keyword generation. In fact,…
Medication Extraction and Mining play an important role in healthcare NLP research due to its practical applications in hospital settings, such as their mapping into standard clinical knowledge bases (SNOMED-CT, BNF, etc.). In this work, we…
While machine learning offers diverse techniques suitable for exploring various medical research questions, a cohesive synergistic framework can facilitate the integration and understanding of new approaches within unified model development…