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The palindromic tree (a.k.a. eertree) for a string $S$ of length $n$ is a tree-like data structure that represents the set of all distinct palindromic substrings of $S$, using $O(n)$ space [Rubinchik and Shur, 2018]. It is known that, when…

Data Structures and Algorithms · Computer Science 2020-11-12 Takuya Mieno , Kiichi Watanabe , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

Let $k \ge 2$ and consider the sequence $\{P_n^{(k)}\}_{n \ge 2-k}$ of $k$-generalized Pell numbers, which begins with the first $k$ terms as $0, \ldots, 0, 0, 1$, and satisfies the recurrence relation $P_n^{(k)} = 2P_{n-1}^{(k)} +…

Number Theory · Mathematics 2025-04-22 Herbert Batte , Darius Guma

Palindromes are important objects in strings which have been extensively studied from combinatorial, algorithmic, and bioinformatics points of views. It is known that the length of the longest palindromic substrings (LPSs) of a given string…

Data Structures and Algorithms · Computer Science 2021-01-11 Mitsuru Funakoshi , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

Given strings $P$ of length $m$ and $T$ of length $n$ over an alphabet of size $\sigma$, the string matching with $k$-mismatches problem is to find the positions of all the substrings in $T$ that are at Hamming distance at most $k$ from…

Data Structures and Algorithms · Computer Science 2013-08-01 Emanuele Giaquinta , Szymon Grabowski , Kimmo Fredriksson

We consider the problems of computing maximal palindromes and distinct palindromes in a trie. A trie is a natural generalization of a string, which can be seen as a single-path tree. There is a linear-time offline algorithm to compute…

Data Structures and Algorithms · Computer Science 2026-01-26 Hiroki Shibata , Mitsuru Funakoshi , Takuya Mieno , Masakazu Ishihata , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

In this work, we revisit the fundamental and well-studied problem of approximate pattern matching under edit distance. Given an integer $k$, a pattern $P$ of length $m$, and a text $T$ of length $n \ge m$, the task is to find substrings of…

Data Structures and Algorithms · Computer Science 2021-06-14 Tomasz Kociumaka , Ely Porat , Tatiana Starikovskaya

For an undirected tree with $n$ edges labelled by single letters, we consider its substrings, which are labels of the simple paths between pairs of nodes. We prove that there are $O(n^{1.5})$ different palindromic substrings. This solves an…

Data Structures and Algorithms · Computer Science 2020-11-30 Paweł Gawrychowski , Tomasz Kociumaka , Wojciech Rytter , Tomasz Waleń

Approximate pattern matching is a natural and well-studied problem on strings: Given a text $T$, a pattern $P$, and a threshold $k$, find (the starting positions of) all substrings of $T$ that are at distance at most $k$ from $P$. We…

Data Structures and Algorithms · Computer Science 2020-11-17 Panagiotis Charalampopoulos , Tomasz Kociumaka , Philip Wellnitz

The equidistant subsequence pattern matching problem is considered. Given a pattern string $P$ and a text string $T$, we say that $P$ is an \emph{equidistant subsequence} of $T$ if $P$ is a subsequence of the text such that consecutive…

Data Structures and Algorithms · Computer Science 2020-02-18 Mitsuru Funakoshi , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda , Ayumi Shinohara

We revisit the complexity of approximate pattern matching in an elastic-degenerate string. Such a string is a sequence of $n$ finite sets of strings of total length $N$, and compactly describes a collection of strings obtained by first…

Data Structures and Algorithms · Computer Science 2025-03-04 Paweł Gawrychowski , Adam Górkiewicz , Pola Marciniak , Solon P. Pissis , Karol Pokorski

A central task in string processing is text indexing, where the goal is to preprocess a text (a string of length $n$) into an efficient index (a data structure) supporting queries about the text. Cole, Gottlieb, and Lewenstein (STOC 2004)…

Data Structures and Algorithms · Computer Science 2025-10-31 Tomasz Kociumaka , Jakub Radoszewski

We prove a precise formula for the minimal number K(n) such that every binary word of length $n$ can be divided into K(n) palindromes. Also we estimate the average number $\ol K(n)$ of palindromes composing a random binary word of the…

Combinatorics · Mathematics 2011-05-20 Alex Ravsky

Identifying palindromes in sequences has been an interesting line of research in combinatorics on words and also in computational biology, after the discovery of the relation of palindromes in the DNA sequence with the HIV virus. Efficient…

Data Structures and Algorithms · Computer Science 2017-03-28 Michał Adamczyk , Mai Alzamel , Panagiotis Charalampopoulos , Costas S. Iliopoulos , Jakub Radoszewski

Although real-world text datasets, such as DNA sequences, are far from being uniformly random, average-case string searching algorithms perform significantly better than worst-case ones in most applications of interest. In this paper, we…

Data Structures and Algorithms · Computer Science 2018-01-16 Lorraine A. K. Ayad , Panagiotis Charalampopoulos , Costas S. Iliopoulos , Solon P. Pissis

Let $k\ge 2$ and $\{F_n^{(k)}\}_{n\geq 2-k}$ be the sequence of $k$--generalized Fibonacci numbers whose first $k$ terms are $0,\ldots,0,0,1$ and each term afterwards is the sum of the preceding $k$ terms. In this paper, we determine all…

Number Theory · Mathematics 2025-04-15 Herbert Batte , Florian Luca

In the classical longest palindromic substring (LPS) problem, we are given a string $S$ of length $n$, and the task is to output a longest palindromic substring in $S$. Gilbert, Hajiaghayi, Saleh, and Seddighin [SPAA 2023] showed how to…

Data Structures and Algorithms · Computer Science 2025-11-18 Solon P. Pissis

We consider string matching with variable length gaps. Given a string $T$ and a pattern $P$ consisting of strings separated by variable length gaps (arbitrary strings of length in a specified range), the problem is to find all ending…

Data Structures and Algorithms · Computer Science 2011-10-14 Philip Bille , Inge Li Goertz , Hjalte Wedel Vildhøj , David Kofoed Wind

The {\em longest common subsequence (LCS)} problem is a classic and well-studied problem in computer science. Palindrome is a word which reads the same forward as it does backward. The {\em longest common palindromic subsequence (LCPS)}…

Data Structures and Algorithms · Computer Science 2011-10-25 Shihabur Rahman Chowdhury , Md. Mahbubul Hasan , Sumaiya Iqbal , M. Sohel Rahman

Given a language L and a nondeterministic finite automaton M, we consider whether we can determine efficiently (in the size of M) if M accepts at least one word in L, or infinitely many words. Given that M accepts at least one word in L, we…

Computational Complexity · Computer Science 2009-04-14 Terry Anderson , John Loftus , Narad Rampersad , Nicolae Santean , Jeffrey Shallit

The classical pattern matching asks for locating all occurrences of one string, called the pattern, in another, called the text, where a string is simply a sequence of characters. Due to the potential practical applications, it is desirable…

Data Structures and Algorithms · Computer Science 2024-10-30 Jonas Ellert , Paweł Gawrychowski , Adam Górkiewicz , Tatiana Starikovskaya