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Pre-trained large language models(LLMs) have attracted increasing attention in biomedical domains due to their success in natural language processing. However, the complex traits and heterogeneity of multi-sources genomics data pose…

Computation and Language · Computer Science 2025-11-25 Yanjun Lyu , Zihao Wu , Lu Zhang , Jing Zhang , Yiwei Li , Wei Ruan , Zhengliang Liu , Zeyu Zhang , Xiang Li , Rongjie Liu , Chao Huang , Wentao Li , Tianming Liu , Dajiang Zhu

We present a comprehensive evaluation of gender fairness in large language models (LLMs), focusing on their ability to handle both binary and non-binary genders. While previous studies primarily focus on binary gender distinctions, we…

Computation and Language · Computer Science 2025-06-19 Zhengyang Shan , Emily Ruth Diana , Jiawei Zhou

Recent advancements in large language models (LLMs) have showcased significant improvements in mathematics. However, traditional math benchmarks like GSM8k offer a unidimensional perspective, falling short in providing a holistic assessment…

Computation and Language · Computer Science 2024-05-21 Hongwei Liu , Zilong Zheng , Yuxuan Qiao , Haodong Duan , Zhiwei Fei , Fengzhe Zhou , Wenwei Zhang , Songyang Zhang , Dahua Lin , Kai Chen

Benchmarks for large language models (LLMs) have progressed from snippet-level function generation to repository-level issue resolution, yet they overwhelmingly target implementation correctness. Software architecture tasks remain…

Software Engineering · Computer Science 2026-03-19 Bassam Adnan , Aviral Gupta , Sreemaee Akshathala , Karthik Vaidhyanathan

Large Language Models are increasingly popular in genomics due to their potential to decode complex biological sequences. Hence, researchers require a standardized benchmark to evaluate DNA Language Models (DNA LMs) capabilities. However,…

Genomics · Quantitative Biology 2025-12-12 Davide Greco , Konrad Rawlik

Effective processing, interpretation, and management of sensor data have emerged as a critical component of cyber-physical systems. Traditionally, processing sensor data requires profound theoretical knowledge and proficiency in…

Artificial Intelligence · Computer Science 2025-04-01 Pengrui Quan , Xiaomin Ouyang , Jeya Vikranth Jeyakumar , Ziqi Wang , Yang Xing , Mani Srivastava

The rapid advancements in large language models (LLMs), particularly in their reasoning capabilities, hold transformative potential for addressing complex challenges and boosting scientific discovery in atmospheric science. However,…

Machine Learning · Computer Science 2025-10-07 Chenyue Li , Wen Deng , Mengqian Lu , Binhang Yuan

We now need more than ever to make genome analysis more intelligent. We need to read, analyze, and interpret our genomes not only quickly, but also accurately and efficiently enough to scale the analysis to population level. There currently…

With the evolution of large language models (LLMs), their robustness against individual simple biases has been enhanced. However, we observe that the ensemble of multiple simple biases still exerts a significant adverse impact on LLMs.…

Computation and Language · Computer Science 2026-04-21 Zhouhao Sun , Zhiyuan Kan , Xiao Ding , Li Du , Bibo Cai , Yang Zhao , Bing Qin , Ting Liu

Large Language Models (LLMs) have achieved remarkable progress in recent years, driving their adoption across a wide range of domains, including computer security. In reverse engineering, LLMs are increasingly applied to critical tasks such…

Cryptography and Security · Computer Science 2026-05-01 Jun Yeon Won , Xin Jin , Shiqing Ma , Zhiqiang Lin

The code generation capabilities of large language models(LLMs) have emerged as a critical dimension in evaluating their overall performance. However, prior research has largely overlooked the security risks inherent in the generated code.…

Cryptography and Security · Computer Science 2025-06-23 Xinghang Li , Jingzhe Ding , Chao Peng , Bing Zhao , Xiang Gao , Hongwan Gao , Xinchen Gu

Writing code requires significant time and effort in software development. To automate this process, researchers have made substantial progress using Large Language Models (LLMs) for code generation. Many benchmarks like HumanEval and…

Software Engineering · Computer Science 2026-04-27 Jia Li , Hongyi Deng , Yiran Zhang , Kechi Zhang , Tianqi Shao , Tiankuo Zhao , Weinan Wang , Zhi Jin , Ge Li , Yang Liu , Yingtao Fang , Yihong Dong

Multimodal conversational agents are highly desirable because they offer natural and human-like interaction. However, there is a lack of comprehensive end-to-end solutions to support collaborative development and benchmarking. While…

Human-Computer Interaction · Computer Science 2024-11-19 Qiang Sun , Yuanyi Luo , Sirui Li , Wenxiao Zhang , Wei Liu

Inverse design of materials has significantly advanced target-driven formulation optimization, yet existing materials machine learning benchmarks remain limited to forward property prediction, failing to systematically evaluate inverse…

Materials Science · Physics 2026-05-27 Linhan Wu , Chenxi Wang , Chuhan Yang , Zhengwei Yang , Yuyang Liu

Recent advances in LLM-guided evolutionary computation, particularly AlphaEvolve (Novikov et al., 2025; Georgiev et al., 2025), have demonstrated remarkable success in discovering novel mathematical constructions and solving challenging…

Neural and Evolutionary Computing · Computer Science 2025-11-25 Valentin Khrulkov , Andrey Galichin , Denis Bashkirov , Dmitry Vinichenko , Oleg Travkin , Roman Alferov , Andrey Kuznetsov , Ivan Oseledets

Autonomous aerial systems increasingly rely on large language models (LLMs) for mission planning, perception, and decision-making, yet the lack of standardized and physically grounded benchmarks limits systematic evaluation of their…

Artificial Intelligence · Computer Science 2025-11-17 Mohamed Amine Ferrag , Abderrahmane Lakas , Merouane Debbah

Autonomous agents powered by large language models (LLMs) promise to accelerate scientific discovery end-to-end, but rigorously evaluating their capacity for verifiable discovery remains a central challenge. Existing benchmarks face a…

Artificial Intelligence · Computer Science 2026-02-04 Zhen Wang , Fan Bai , Zhongyan Luo , Jinyan Su , Kaiser Sun , Xinle Yu , Jieyuan Liu , Kun Zhou , Claire Cardie , Mark Dredze , Eric P. Xing , Zhiting Hu

Benchmarks are central to measuring the capabilities of large language models and guiding model development, yet widespread data leakage from pretraining corpora undermines their validity. Models can match memorized content rather than…

Computation and Language · Computer Science 2025-10-10 Qin Liu , Jacob Dineen , Yuxi Huang , Sheng Zhang , Hoifung Poon , Ben Zhou , Muhao Chen

Pathology foundation models (PFMs) have rapidly advanced and are becoming a common backbone for downstream clinical tasks, offering strong transferability across tissues and institutions. However, for dense prediction (e.g., segmentation),…

Image and Video Processing · Electrical Eng. & Systems 2026-02-05 Weiming Chen , Xitong Ling , Xidong Wang , Zhenyang Cai , Yijia Guo , Mingxi Fu , Ziyi Zeng , Minxi Ouyang , Jiawen Li , Yizhi Wang , Tian Guan , Benyou Wang , Yonghong He

As large language models (LLMs) continue to advance, the need for up-to-date and well-organized benchmarks becomes increasingly critical. However, many existing datasets are scattered, difficult to manage, and make it challenging to perform…

Machine Learning · Computer Science 2025-06-03 Eunsu Kim , Haneul Yoo , Guijin Son , Hitesh Patel , Amit Agarwal , Alice Oh
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