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Brain foundation models have achieved remarkable advances across a wide range of neuroscience tasks. However, most existing models are limited to a single functional modality, restricting their ability to exploit complementary…

Machine Learning · Computer Science 2026-05-18 Hanning Guo , Hanwen Bi , Farah Abdellatif , Andrei Galbenus , Jon. N. Shah , Abigail Morrison , Jürgen Dammers

Medical time series are central to healthcare, enabling continuous monitoring and supporting timely clinical decisions. Despite recent progress, existing methods struggle to jointly model local-global dynamics and handle nonstationarities…

Machine Learning · Computer Science 2026-05-26 Da Zhang , Bingyu Li , Zhiyuan Zhao , Hongyuan Zhang , Junyu Gao , Xuelong Li

Motor imagery (MI) classification is key for brain-computer interfaces (BCIs). Until recent years, numerous models had been proposed, ranging from classical algorithms like Common Spatial Pattern (CSP) to deep learning models such as…

Human-Computer Interaction · Computer Science 2024-09-20 Xiaoxiao Yang , Ziyu Jia

The principled design and discovery of biologically- and physically-informed models of neuronal dynamics has been advancing since the mid-twentieth century. Recent developments in artificial intelligence (AI) have accelerated this progress.…

Neurons and Cognition · Quantitative Biology 2021-12-24 Mahta Ramezanian Panahi , Germán Abrevaya , Jean-Christophe Gagnon-Audet , Vikram Voleti , Irina Rish , Guillaume Dumas

Brain surface-based image registration, an important component of brain image analysis, establishes spatial correspondence between cortical surfaces. Existing iterative and learning-based approaches focus on accurate registration of folding…

Image and Video Processing · Electrical Eng. & Systems 2023-10-18 Jian Li , Greta Tuckute , Evelina Fedorenko , Brian L. Edlow , Bruce Fischl , Adrian V. Dalca

Accurate segmentation of brain tissues from MRI scans is critical for neuroscience and clinical applications, but achieving consistent performance across the human lifespan remains challenging due to dynamic, age-related changes in brain…

Computer Vision and Pattern Recognition · Computer Science 2026-02-10 Yongheng Sun , Jun Shu , Jianhua Ma , Fan Wang

Continuous Glucose Monitoring (CGM) can detect early metabolic subphenotypes (insulin resistance, IR; $\beta$-cell dysfunction), but population-scale deployment faces two coupled problems. First, the same physiological state appears through…

Machine Learning · Computer Science 2026-05-05 Hada Melino Muhammad , Zechen Li , Flora Salim , Ahmed A. Metwally

Joint Embedding Predictive Architectures (JEPAs) offer a compelling framework for learning world models in compact latent spaces, yet existing methods remain fragile, relying on complex multi-term losses, exponential moving averages,…

Machine Learning · Computer Science 2026-03-26 Lucas Maes , Quentin Le Lidec , Damien Scieur , Yann LeCun , Randall Balestriero

Advances in computational pathology increasingly rely on extracting meaningful representations from Whole Slide Images (WSIs) to support various clinical and biological tasks. In this study, we propose a generalizable deep learning…

Computer Vision and Pattern Recognition · Computer Science 2025-09-26 Shakib Khan , Fariba Dambandkhameneh , Nazim Shaikh , Yao Nie , Raghavan Venugopal , Xiao Li

We present a multi-scale differentiable brain modeling workflow utilizing BrainPy, a unique differentiable brain simulator that combines accurate brain simulation with powerful gradient-based optimization. We leverage this capability of…

Neural and Evolutionary Computing · Computer Science 2024-09-26 Chaoming Wang , Muyang Lyu , Tianqiu Zhang , Sichao He , Si Wu

Multimodal approaches that integrate protein structure and sequence have achieved remarkable success in protein-protein interface prediction. However, extending these methods to protein-peptide interactions remains challenging due to the…

Signal Processing · Electrical Eng. & Systems 2025-11-03 Dian Chen , Yunkai Chen , Tong Lin , Sijie Chen , Xiaolin Cheng

We introduce a novel state-space model (SSM)-based framework for skeleton-based human action recognition, with an anatomically-guided architecture that improves state-of-the-art performance in both clinical diagnostics and general action…

Computer Vision and Pattern Recognition · Computer Science 2024-12-02 Niki Martinel , Mariano Serrao , Christian Micheloni

Large Language Model (LLM) pretraining, finetuning, and evaluation rely on input-space reconstruction and generative capabilities. Yet, it has been observed in vision that embedding-space training objectives, e.g., with Joint Embedding…

Computation and Language · Computer Science 2025-10-08 Hai Huang , Yann LeCun , Randall Balestriero

Recent studies have shown that multi-modeling methods can provide new insights into the analysis of brain components that are not possible when each modality is acquired separately. The joint representations of different modalities is a…

Neurons and Cognition · Quantitative Biology 2022-01-24 Jalal Mirakhorli

Geospatial pixel reasoning aims to generate segmentation masks in remote sensing imagery directly from natural-language instructions. Most existing approaches follow a paradigm that fine-tunes multimodal large language models under…

Computer Vision and Pattern Recognition · Computer Science 2025-10-29 Chengjie Jiang , Yunqi Zhou , Jiafeng Yan , Jing Li , Jiayang Li , Yue Zhou , Hongjie He , Jonathan Li

Aerodynamic surrogate models are increasingly used to replace repeated high-fidelity CFD evaluations in many-query design settings, but current approaches still face two important limitations: they often scale poorly to the very large…

Channel state information (CSI) provides a widely available sensing modality for human and environment perception, but existing CSI sensing models usually rely on task-specific supervised training and require substantial labeled data for…

Machine Learning · Computer Science 2026-05-15 Xuanhao Luo , Zhizhen Li , Yuchen Liu

An essential premise for neuroscience brain network analysis is the successful segmentation of the cerebral cortex into functionally homogeneous regions. Resting-state functional magnetic resonance imaging (rs-fMRI), capturing the…

Neurons and Cognition · Quantitative Biology 2023-09-20 Xiaoxiao Ma , Chunzhi Yi , Zhicai Zhong , Hui Zhou , Baichun Wei , Haiqi Zhu , Feng Jiang

Foundation models have recently attracted significant attention for their impressive generalizability across diverse downstream tasks. However, these models are demonstrated to exhibit great limitations in representing high-frequency…

Image and Video Processing · Electrical Eng. & Systems 2025-04-18 Yuetan Chu , Yilan Zhang , Zhongyi Han , Changchun Yang , Longxi Zhou , Gongning Luo , Chao Huang , Xin Gao

Using functional magnetic resonance imaging (fMRI) and deep learning to explore functional brain networks (FBNs) has attracted many researchers. However, most of these studies are still based on the temporal correlation between the sources…

Neurons and Cognition · Quantitative Biology 2022-11-07 Yiheng Liu , Enjie Ge , Ning Qiang , Tianming Liu , Bao Ge
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