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A k-plex in a graph is a vertex set where each vertex is non-adjacent to at most k vertices (including itself) in this set, and the Maximum k-plex Problem (MKP) is to find the largest k-plex in the graph. As a practical NP-hard problem, MKP…
We present an algorithm for determining whether a bipartite graph $G$ is 2-chordal (formerly doubly chordal bipartite). At its core this algorithm is an extension of the existing efficient algorithm for determining whether a graph is…
Let $G=(V,E)$ be an undirected graph. We call $D_t \subseteq V$ as a total dominating set (TDS) of $G$ if each vertex $v \in V$ has a dominator in $D$ other than itself. Here we consider the TDS problem in unit disk graphs, where the…
Closeness is an important centrality measure widely used in the analysis of real-world complex networks. In particular, the problem of selecting the k most central nodes with respect to this measure has been deeply analyzed in the last…
We introduce a new concept of a subgraph class called a superbubble for analyzing assembly graphs, and propose an efficient algorithm for detecting it. Most assembly algorithms utilize assembly graphs like the de Bruijn graph or the overlap…
Finding the k-medianin a network involves identifying a subset of k vertices that minimize the total distance to all other vertices in a graph. This problem has been extensively studied in computer science, graph theory, operations…
$k$-core is a subgraph where every node has at least $k$ neighbors within the subgraph. The $k$-core subgraphs has been employed in large platforms like Network Repository to comprehend the underlying structures and dynamics of the network.…
The maximum graph bisection problem is a well known graph partition problem. The problem has been proven to be NP-hard. In the maximum graph bisection problem it is required that the set of vertices is divided into two partition with equal…
The Densest $k$-Subgraph (D$k$S) problem, and its corresponding minimization problem Smallest $p$-Edge Subgraph (S$p$ES), have come to play a central role in approximation algorithms. This is due both to their practical importance, and…
We introduce a variation of the scheduling with precedence constraints problem that has applications to molecular folding and production management. We are given a bipartite graph $H=(B,S)$. Vertices in $B$ are thought of as goods or…
The GC problem is to identify a pre-determined number of center vertices such that the distances or costs from (or to) the centers to (or from) other vertices is minimized. The bottleneck of a path is the minimum capacity of edges on the…
With the emergence of graph databases, the task of frequent subgraph discovery has been extensively addressed. Although the proposed approaches in the literature have made this task feasible, the number of discovered frequent subgraphs is…
Graph partitioning is a key fundamental problem in the area of big graph computation. Previous works do not consider the practical requirements when optimizing the big data analysis in real applications. In this paper, motivated by…
Given a bipartite graph $G = (V_1,V_2,E)$ where edges take on {\it both} positive and negative weights from set $\mathcal{S}$, the {\it maximum weighted edge biclique} problem, or $\mathcal{S}$-MWEB for short, asks to find a bipartite…
Subgraph queries also known as subgraph isomorphism search is a fundamental problem in querying graph-like structured data. It consists to enumerate the subgraphs of a data graph that match a query graph. This problem arises in many…
We give a randomized algorithm that approximates the number of independent sets in a dense, regular bipartite graph -- in the language of approximate counting, we give an FPRAS for #BIS on the class of dense, regular bipartite graphs.…
The Set-Union Knapsack Problem (SUKP) and Budgeted Maximum Coverage Problem (BMCP) are two closely related variant problems of the popular knapsack problem. Given a set of weighted elements and a set of items with nonnegative values, where…
We introduce a search problem for finding a regular bi-partite graph of maximum attainable girth for specified degree and number of vertices, by restricting the search space using a series of mathematically rigourous arguments from [1] and…
Let $G=(V,E)$ be a graph with unit-length edges and nonnegative costs assigned to its vertices. Being given a list of pairwise different vertices $S=(s_1,s_2,\ldots,s_p)$, the {\em prioritized Voronoi diagram} of $G$ with respect to $S$ is…
Let $G=(V,E)$ and $H$ be two graphs. Packing problem is to find in $G$ the largest number of independent subgraphs each of which is isomorphic to $H$. Let $U\subset{V}$. If the graph $G-U$ has no subgraph isomorphic to $H$, $U$ is a cover…