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The package mvlearnR and accompanying Shiny App is intended for integrating data from multiple sources or views or modalities (e.g. genomics, proteomics, clinical and demographic data). Most existing software packages for multiview learning…

Genomics · Quantitative Biology 2023-11-29 Elise F. Palzer , Sandra E. Safo

We introduce YATO, an open-source, easy-to-use toolkit for text analysis with deep learning. Different from existing heavily engineered toolkits and platforms, YATO is lightweight and user-friendly for researchers from cross-disciplinary…

Computation and Language · Computer Science 2023-10-19 Zeqiang Wang , Yile Wang , Jiageng Wu , Zhiyang Teng , Jie Yang

Interpretability has attracted increasing attention in earth observation problems. We apply interactive visualization and representation analysis to guide interpretation of glacier segmentation models. We visualize the activations from a…

Computer Vision and Pattern Recognition · Computer Science 2022-03-14 Minxing Zheng , Xinran Miao , Kris Sankaran

Although exploring alternatives is fundamental to creating better interface designs, current processes for creating alternatives are generally manual, limiting the alternatives a designer can explore. We present Scout, a system that helps…

Human-Computer Interaction · Computer Science 2020-01-16 Amanda Swearngin , Chenglong Wang , Alannah Oleson , James Fogarty , Amy J. Ko

Mathematical software and graph-theoretical algorithmic packages to efficiently model, analyze and query graphs are crucial in an era where large-scale spatial, societal and economic network data are abundantly available. One such package…

Data Structures and Algorithms · Computer Science 2020-02-04 Dimitrios Michail , Joris Kinable , Barak Naveh , John V Sichi

Current research in form understanding predominantly relies on large pre-trained language models, necessitating extensive data for pre-training. However, the importance of layout structure (i.e., the spatial relationship between the entity…

Computation and Language · Computer Science 2024-06-05 Pritika Ramu , Sijia Wang , Lalla Mouatadid , Joy Rimchala , Lifu Huang

Open-source EDA tools are rapidly advancing, fostering collaboration, innovation, and knowledge sharing within the EDA community. However, the growing complexity of these tools, characterized by numerous design parameters and heuristics,…

Hardware Architecture · Computer Science 2024-08-29 Zesong Jiang , Qing Zhang , Cheng Liu , Long Cheng , Huawei Li , Xiaowei Li

One of the most common ways to represent and share visual designs is with vector graphics. Designers working with vector graphics often explore layout alternatives and generate them by moving and resizing elements. The motivation for this…

Human-Computer Interaction · Computer Science 2023-09-22 Jeremy Warner , Shuyao Zhou , Bjoern Hartmann

R is a language and computing environment that has been developed for data manipulation, statistical computing, and scientific graphing. In the paper, we demonstrate its use analyzing data collected in a few experiments taken from an…

Physics Education · Physics 2009-11-25 Primoz Peterlin

The use of Shiny in research publications is investigated. From the appearance of this popular web application framework for R through to 2018, it has been utilised in many diverse research areas. While it can be shown that the complexity…

Computation · Statistics 2021-01-27 Peter Kasprzak , Lachlan Mitchell , Olena Kravchuk , Andy Timmins

Motivation: Model selection is a ubiquitous challenge in statistics. For penalized models, model selection typically entails tuning hyperparameters to maximize a measure of fit or minimize out-of-sample prediction error. However, these…

Methodology · Statistics 2025-05-29 Priyam Das , Sarah Robinson , Christine B. Peterson

While ray tracing has become increasingly common and path tracing is well understood by now, a major challenge lies in crafting an easy-to-use and efficient system implementing these technologies. Following a purely physically-based…

Exploration and analysis of high-dimensional data are important tasks in many fields that produce large and complex data, like the financial sector, systems biology, or cultural heritage. Tailor-made visual analytics software is developed…

Invariant and equivariant networks are useful in learning data with symmetry, including images, sets, point clouds, and graphs. In this paper, we consider invariant and equivariant networks for symmetries of finite groups. Invariant and…

Machine Learning · Computer Science 2021-10-18 Akiyoshi Sannai , Makoto Kawano , Wataru Kumagai

TypeShift is a tool for visualizing linguistic patterns in the timing of typing production. Language production is a complex process which draws on linguistic, cognitive and motor skills. By visualizing holistic trends in the typing…

Computation and Language · Computer Science 2021-03-09 Adam Goodkind

Software visualization helps to comprehend the system by providing a vivid illustration. The developers, as well as the analysts, can have a glance over the total system to understand the basic changes over time from a high-level point of…

Software Engineering · Computer Science 2021-08-16 Fazle Rabbi , Nishat Tasnim Niloy , Nadia Nahar , Md. Nurul Ahad Tawhid

In the Jupyter ecosystem, data visualization is usually done with "widgets" created as notebook cell outputs. While this mechanism works well in some circumstances, it is not well-suited to presenting interfaces that are long-lived,…

Instrumentation and Methods for Astrophysics · Physics 2022-12-09 Peter K. G. Williams , Jonathan Carifio , Henrik Norman , A. David Weigel

Cyanure is an open-source C++ software package with a Python interface. The goal of Cyanure is to provide state-of-the-art solvers for learning linear models, based on stochastic variance-reduced stochastic optimization with acceleration…

Machine Learning · Statistics 2019-12-23 Julien Mairal

Establishing common ground and maintaining shared awareness amongst participants is a key challenge in collaborative visualization. For real-time collaboration, existing work has primarily focused on synchronizing constituent visualizations…

Human-Computer Interaction · Computer Science 2020-09-08 Rupayan Neogy , Jonathan Zong , Arvind Satyanarayan

The advent of the "pre-train, prompt" paradigm has recently extended its generalization ability and data efficiency to graph representation learning, following its achievements in Natural Language Processing (NLP). Initial graph prompt…

Machine Learning · Computer Science 2025-01-20 Jiapeng Zhu , Zichen Ding , Jianxiang Yu , Jiaqi Tan , Xiang Li , Weining Qian