Related papers: Rotation distance using flows

Good representations for phylogenetic trees and networks are important for optimizing storage efficiency and implementation of scalable methods for the inference and analysis of evolutionary trees for genes, genomes and species. We…

We show optimal lower bounds for spanning forest computation in two different models: * One wants a data structure for fully dynamic spanning forest in which updates can insert or delete edges amongst a base set of $n$ vertices. The sole…

We study the rotor-router walk on the infinite square lattice with the outgoing edges at each lattice site ordered clockwise. In the previous paper [J.Phys.A: Math. Theor. 48, 285203 (2015)], we have considered the loops created by rotors…

We investigate the space of consistent tree-level extensions of the maximal supergravities in ten dimensions. We parametrize theory space by the first few EFT coefficients and by the on-shell coupling of the lightest massive state, and…

A fundamental component of networking infras- tructure is the policy, used in routing tables and firewalls. Accordingly, there has been extensive study of policies. However, the theory of such policies indicates that the size of the…

We are interested in the biased random walk on a supercritical Galton--Watson tree in the sense of Lyons, Pemantle and Peres, and study a phenomenon of slow movement. In order to observe such a slow movement, the bias needs to be random;…

Edit distance between trees is a natural generalization of the classical edit distance between strings, in which the allowed elementary operations are contraction, uncontraction and relabeling of an edge. Demaine et al. [ACM Trans. on…

Almost 30 years ago, Zhang and Shasha (1989) published a seminal paper describing an efficient dynamic programming algorithm computing the tree edit distance, that is, the minimum number of node deletions, insertions, and replacements that…

The last decade brought a significant increase in the amount of data and a variety of new inference methods for reconstructing the detailed evolutionary history of various cancers. This brings the need of designing efficient procedures for…

Replica symmetry breaking postulates that near optima of spin glass Hamiltonians have an ultrametric structure. Namely, near optima can be associated to leaves of a tree, and the Euclidean distance between them corresponds to the distance…

In 2012, Pflug and Pichler proved, under regularity assumptions, that the value function in Multistage Stochastic Programming (MSP) is Lipschitz continuous w.r.t. the Nested Distance, which is a distance between scenario trees (or discrete…

Tree spanners approximate distances within graphs; a subtree of a graph is a tree $t$-spanner of the graph if and only if for every pair of vertices their distance in the subtree is at most $t$ times their distance in the graph. When a…

In this article it is shown that the Brownian motion on the continuum random tree is the scaling limit of the simple random walks on any family of discrete $n$-vertex ordered graph trees whose search-depth functions converge to the Brownian…

Solomon and Elkin constructed a shortcutting scheme for weighted trees which results in a 1-spanner for the tree metric induced by the input tree. The spanner has logarithmic lightness, logarithmic diameter, a linear number of edges and…

We present strong evidence that the tree level slow roll bounds of arXiv:1807.05193 and arXiv:1810.05506 are valid, even when the tachyon has overlap with the volume of the cycle wrapped by the orientifold. This extends our previous results…

Let $M_n$ be the minimal position at generation $n$, of a real-valued branching random walk in the boundary case. As $n \to \infty$, $M_n- {3 \over 2} \log n$ is tight (see [1][9][2]). We establish here a law of iterated logarithm for the…

A tree with $n$ vertices has at most $95^{n/13}$ minimal dominating sets. The growth constant $\lambda = \sqrt[13]{95} \approx 1.4194908$ is best possible. It is obtained in a semi-automatic way as a kind of "dominant eigenvalue" of a…

We consider the graph $G_n$ with vertex set $V(G_n) = \{ 1, 2, \ldots, n\}$ and $\{i,j\} \in E(G_n)$ if and only if $0<|i-j| \leq 2$. We call $G_n$ the straight linear 2-tree on $n$ vertices. Using $\Delta$--Y transformations and identities…

We describe a kernel of size 9k-8 for the NP-hard problem of computing the Tree Bisection and Reconnect (TBR) distance k between two unrooted binary phylogenetic trees. We achieve this by extending the existing portfolio of reduction rules…

We present two algorithms for computing the geodesic distance between phylogenetic trees in tree space, as introduced by Billera, Holmes, and Vogtmann (2001). We show that the possible combinatorial types of shortest paths between two trees…