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The Positional Burrows-Wheeler Transform (PBWT) is a fundamental data structure for the efficient representation and analysis of large-scale haplotype panels. For a panel of $h$ sequences $\{S_1, \dots, S_h\}$ over $m$ sites, a key…

Data Structures and Algorithms · Computer Science 2026-05-07 Paola Bonizzoni , Travis Gagie , Younan Gao

The permutation language $P_n$ consists of all words that are permutations of a fixed alphabet of size $n$. Using divide-and-conquer, we construct a regular expression $R_n$ that specifies $P_n$. We then give explicit bounds for the length…

Formal Languages and Automata Theory · Computer Science 2018-12-18 Antonio Molina Lovett , Jeffrey Shallit

We introduce a class of algorithms for constructing Fourier representations of Gaussian processes in $1$ dimension that are valid over ranges of hyperparameter values. The scaling and frequencies of the Fourier basis functions are evaluated…

Computation · Statistics 2024-06-05 Philip Greengard

In this note we present a simplified and slightly generalized version of a lemma the authors published in 1987. The lemma as stated here asserts that if the order of a permutation of $n$ elements is greater than $n^{\alpha}$ then some…

Combinatorics · Mathematics 2014-01-03 László Babai , Ákos Seress

We consider representations of general non-overlapping placements of rectangles by spatial relations (west, south, east, north) of pairs of rectangles. We call a set of representations complete if it contains a representation of every…

Combinatorics · Mathematics 2017-09-01 Jannik Silvanus , Jens Vygen

We present an efficient reduction from the Bounded integer programming (BIP) to the Subspace avoiding problem (SAP) in lattice theory. The reduction has some special properties with some interesting consequences. The first is the new upper…

Computational Complexity · Computer Science 2008-08-12 Thân Quang Khoát

The Permutation Pattern Matching problem, asking whether a pattern permutation $\pi$ is contained in a permutation $\tau$, is known to be NP-complete. In this paper we present two polynomial time algorithms for special cases. The first…

Combinatorics · Mathematics 2023-06-22 Michael H. Albert , Marie-Louise Lackner , Martin Lackner , Vincent Vatter

Sublinear time algorithms for approximating maximum matching size have long been studied. Much of the progress over the last two decades on this problem has been on the algorithmic side. For instance, an algorithm of Behnezhad [FOCS'21]…

Data Structures and Algorithms · Computer Science 2022-11-30 Soheil Behnezhad , Mohammad Roghani , Aviad Rubinstein

A permutation graph is the intersection graph of a set of segments between two parallel lines. In other words, they are defined by a permutation $\pi$ on $n$ elements, such that $u$ and $v$ are adjacent if an only if $u<v$ but…

Data Structures and Algorithms · Computer Science 2024-07-18 Paweł Gawrychowski , Wojciech Janczewski

The membership problem asks to maintain a set $S\subseteq[u]$, supporting insertions and membership queries, i.e., testing if a given element is in the set. A data structure that computes exact answers is called a dictionary. When a (small)…

Data Structures and Algorithms · Computer Science 2020-04-28 Mingmou Liu , Yitong Yin , Huacheng Yu

In this paper, we introduce a variant of spectral sparsification, called probabilistic $(\varepsilon,\delta)$-spectral sparsification. Roughly speaking, it preserves the cut value of any cut $(S,S^{c})$ with an $1\pm\varepsilon$…

Data Structures and Algorithms · Computer Science 2014-01-03 Yin Tat Lee

A set of permutations of $\{1,2,\dots,n\}$ is $t$-intersecting if any two permutations agree on at least $t$ inputs. A recent work by Kupavskii, in the spirit of the Erd\H{o}s-Ko-Rado Theorem, shows that for all $t\leq…

Combinatorics · Mathematics 2026-05-26 Pitchayut Saengrungkongka

Permutations whose prefixes contain at least as many ascents as descents are called ballot permutations. Lin, Wang, and Zhao have previously enumerated ballot permutations avoiding small patterns and have proposed the problem of enumerating…

Combinatorics · Mathematics 2024-04-25 Nathan Sun

Tree-like tableaux are objects in bijection with alternative or permutation tableaux. They have been the subject of a fruitful combinatorial study for the past few years. In the present work, we define and study a new subclass of tree-like…

The Baxter permuton is a random probability measure on the unit square which describes the scaling limit of uniform Baxter permutations. We find an explict formula for the expectation of the Baxter permuton, i.e.\ the density of its…

Probability · Mathematics 2023-01-19 Jacopo Borga , Nina Holden , Xin Sun , Pu Yu

Obtaining a non-trivial (super-linear) lower bound for computation of the Fourier transform in the linear circuit model has been a long standing open problem for over 40 years. An early result by Morgenstern from 1973, provides an $\Omega(n…

Computational Complexity · Computer Science 2014-07-25 Nir Ailon

Data dispersed across multiple files are commonly integrated through probabilistic linkage methods, where even minimal error rates in record matching can significantly contaminate subsequent statistical analyses. In regression problems, we…

Statistics Theory · Mathematics 2024-09-18 Abhisek Chakraborty , Saptati Datta

We say a permutation $\pi=\pi_1\pi_2\cdots\pi_n$ in the symmetric group $\mathfrak{S}_n$ has a peak at index $i$ if $\pi_{i-1}<\pi_i>\pi_{i+1}$ and we let $P(\pi)=\{i \in \{1, 2, \ldots, n\} \, \vert \, \mbox{$i$ is a peak of $\pi$}\}$.…

Group Theory · Mathematics 2016-11-23 Alexander Diaz-Lopez , Pamela E. Harris , Erik Insko , Darleen Perez-Lavin

The field of succinct data structures has flourished over the last 16 years. Starting from the compressed suffix array (CSA) by Grossi and Vitter (STOC 2000) and the FM-index by Ferragina and Manzini (FOCS 2000), a number of generalizations…

Data Structures and Algorithms · Computer Science 2016-09-22 Djamal Belazzougui , Fabio Cunial , Juha Kärkkäinen , Veli Mäkinen

We extend and generalize many of the enumerative results concerning West's stack-sorting map $s$. First, we prove a useful theorem that allows one to efficiently compute $|s^{-1}(\pi)|$ for any permutation $\pi$, answering a question of…

Combinatorics · Mathematics 2019-02-12 Colin Defant