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Most proteins perform their biological function by interacting with one or more molecular partners. In this respect, characterizing the features of the molecular surface, especially in the portions where the interaction takes place, turned…

Motivated by applications from computer vision to bioinformatics, the field of shape analysis deals with problems where one wants to analyze geometric objects, such as curves, while ignoring actions that preserve their shape, such as…

Computer Vision and Pattern Recognition · Computer Science 2025-01-07 Emmanuel Hartman , Yashil Sukurdeep , Nicolas Charon , Eric Klassen , Martin Bauer

We give an algorithm for approximating a given plane curve segment by a planar elastic curve. The method depends on an analytic representation of the space of elastic curve segments, together with a geometric method for obtaining a good…

Numerical Analysis · Mathematics 2016-08-05 David Brander , Jens Gravesen , Toke Bjerge Nørbjerg

Reverse Engineering a CAD shape from other representations is an important geometric processing step for many downstream applications. In this work, we introduce a novel neural network architecture to solve this challenging task and…

Computer Vision and Pattern Recognition · Computer Science 2022-09-05 Joseph G. Lambourne , Karl D. D. Willis , Pradeep Kumar Jayaraman , Longfei Zhang , Aditya Sanghi , Kamal Rahimi Malekshan

Surface reconstruction with preservation of geometric features is a challenging computer vision task. Despite significant progress in implicit shape reconstruction, state-of-the-art mesh extraction methods often produce aliased,…

Computer Vision and Pattern Recognition · Computer Science 2023-12-01 Natalia Soboleva , Olga Gorbunova , Maria Ivanova , Evgeny Burnaev , Matthias Nießner , Denis Zorin , Alexey Artemov

The nonrigid alignment between a pre-operative biomechanical model and an intra-operative observation is a critical step to track the motion of a soft organ in augmented surgery. While many elastic registration procedures introduce…

Optimization and Control · Mathematics 2022-06-23 Guillaume Mestdagh , Stéphane Cotin

Continuum robots have emerged as a promising technology in the medical field due to their potential of accessing deep sited locations of the human body with low surgical trauma. When deriving physics-based models for these robots,…

Robotics · Computer Science 2024-05-27 Matthias K. Hoffmann , Julian Mühlenhoff , Zhaoheng Ding , Thomas Sattel , Kathrin Flaßkamp

We present a cost-efficient and versatile method to map an unknown 3D freeform surface using only sparse measurements while the end-effector of a robotic manipulator moves along the surface. The geometry is locally approximated by a plane,…

Robotics · Computer Science 2021-10-08 Manuel Amersdorfer , Thomas Meurer

In the past few years, following the differentiable programming paradigm, there has been a growing interest in computing the gradient information of physical processes (e.g., physical simulation, image rendering). However, such processes…

Robotics · Computer Science 2022-06-24 Quentin Le Lidec , Louis Montaut , Cordelia Schmid , Ivan Laptev , Justin Carpentier

Parallel implementation of numerical adaptive mesh refinement (AMR)strategies for solving 3D elastostatic contact mechanics problems is an essential step toward complex simulations that exceed current performance levels. This paper…

Numerical Analysis · Mathematics 2025-11-26 Alexandre Epalle , Isabelle Ramière , Guillaume Latu , Frédéric Lebon

Protein structural alignment is an important problem in computational biology. In this paper, we present first successes on provably optimal pairwise alignment of protein inter-residue distance matrices, using the popular Dali scoring…

Quantitative Methods · Quantitative Biology 2011-04-18 Inken Wohlers , Rumen Andonov , Gunnar W. Klau

In the context of computer assist surgical techniques, a new elastic registration method of 3D meshes is presented. In our applications, one mesh is a high density mesh (30000 vertexes), the second is a low density one (1000 vertexes).…

Medical Physics · Physics 2016-08-16 Maxime Berar , Michel Desvignes , Gérard Bailly , Yohan Payan

This paper addresses the issue of matching rigid 3D object points with 2D image points through point registration based on maximum likelihood principle in computer simulated images. Perspective projection is necessary when transforming 3D…

Computer Vision and Pattern Recognition · Computer Science 2018-03-08 Jing Wu

The diameter, radius and eccentricities are natural graph parameters. While these problems have been studied extensively, there are no known dynamic algorithms for them beyond the ones that follow from trivial recomputation after each…

Data Structures and Algorithms · Computer Science 2019-12-18 Bertie Ancona , Monika Henzinger , Liam Roditty , Virginia Vassilevska Williams , Nicole Wein

We address the problem of human motion tracking by registering a surface to 3-D data. We propose a method that iteratively computes two things: Maximum likelihood estimates for both the kinematic and free-motion parameters of a kinematic…

Computer Vision and Pattern Recognition · Computer Science 2023-11-21 Radu Horaud , Matti Niskanen , Guillaume Dewaele , Edmond Boyer

Dense vertex-to-vertex correspondence between 3D faces is a fundamental and challenging issue for 3D&2D face analysis. While the sparse landmarks have anatomically ground-truth correspondence, the dense vertex correspondences on most facial…

Computer Vision and Pattern Recognition · Computer Science 2021-09-24 Zhenfeng Fan , Silong Peng , Shihong Xia

We consider the problem of matching two shapes assuming these shapes are related by an elastic deformation. Using linearized elasticity theory and the finite element method we seek an elastic deformation that is caused by simple external…

Computer Vision and Pattern Recognition · Computer Science 2015-10-16 Konrad Simon , Ronen Basri

We propose a method to non-rigidly align a three-dimensional (3D) volumetric image with a two-dimensional (2D) planar image representing a projection of the deformed volume. The application in mind comes from biological studies in which 2D…

Optimization and Control · Mathematics 2021-01-12 Paul Striewski , Benedikt Wirth

Affine Grassmannian has been favored for expressing proximity between lines and planes due to its theoretical exactness in measuring distances among features. Despite this advantage, the existing method can only measure the proximity…

Computer Vision and Pattern Recognition · Computer Science 2025-07-28 Jaeho Shin , Hyeonjae Gil , Junwoo Jang , Maani Ghaffari , Ayoung Kim

We address the problem of unsupervised learning of complex articulated object models from 3D range data. We describe an algorithm whose input is a set of meshes corresponding to different configurations of an articulated object. The…

Computer Vision and Pattern Recognition · Computer Science 2012-07-19 Dragomir Anguelov , Daphne Koller , Hoi-Cheung Pang , Praveen Srinivasan , Sebastian Thrun