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We consider a system of interacting Fisher-Wright diffusions with seed-bank. Individuals live in colonies and are subject to resampling and migration as long as they are active. Each colony has a structured seed-bank into which individuals…

Probability · Mathematics 2020-04-30 Andreas Greven , Frank den Hollander , Margriet Oomen

Life-history tradeoffs among species are major drivers of community assembly. Most studies investigate how tradeoffs promote deterministic coexistence of species. It remains unclear how tradeoffs may instead promote historically contingent…

Populations and Evolution · Quantitative Biology 2021-03-09 Niv DeMalach , Nadav Shnerb , Tadashi Fukami

A microscopic agent dynamical model for diploid age-structured populations is used to study evolution of polymorphism and sympatric speciation. The underlying ecology is represented by a unimodal distribution of resources of some width.…

Populations and Evolution · Quantitative Biology 2015-06-26 E. Brigatti , J. S. Sa' Martins , I. Roditi

Machine vision for plant phenotyping is an emerging research area for producing high throughput in agriculture and crop science applications. Since 2D based approaches have their inherent limitations, 3D plant analysis is becoming state of…

Computer Vision and Pattern Recognition · Computer Science 2017-05-02 Ayan Chaudhury , Christopher Ward , Ali Talasaz , Alexander G. Ivanov , Mark Brophy , Bernard Grodzinski , Norman P. A. Huner , Rajni V. Patel , John L. Barron

Ecological trade-offs between species are often invoked to explain species coexistence in ecological communities. However, few mathematical models have been proposed for which coexistence conditions can be characterized explicitly in terms…

Populations and Evolution · Quantitative Biology 2013-05-21 Bart Haegeman , Tewfik Sari , Rampal S. Etienne

Quantifying organism-level phenotypes, such as growth dynamics and biomass accumulation, is fundamental to understanding agronomic traits and optimizing crop production. However, quality growing data of plants at scale is difficult to…

Quantitative Methods · Quantitative Biology 2025-07-10 Adam J Riesselman , Evan M Cofer , Therese LaRue , Wim Meeussen

We study the influence of the seed in random trees grown according to the uniform attachment model, also known as uniform random recursive trees. We show that different seeds lead to different distributions of limiting trees from a total…

Probability · Mathematics 2014-10-22 Sébastien Bubeck , Ronen Eldan , Elchanan Mossel , Miklós Z. Rácz

We study non-uniform percolation in a two-dimensional cluster growth model with multiple seeds. With increasing concentration of seeds, the percolation threshold is found to increase monotonically, while the exponents for correlation…

Disordered Systems and Neural Networks · Physics 2014-10-08 Hongting Yang , Stephan Haas

We consider the evolution of populations under the joint action of mutation and differential reproduction, or selection. The population is modelled as a finite-type Markov branching process in continuous time, and the associated…

Populations and Evolution · Quantitative Biology 2009-02-23 Ellen Baake , Hans-Otto Georgii

Regular vegetation patterns in semiarid ecosystems are believed to arise from the interplay between long-range competition and facilitation processes acting at smaller distances. We show that, under rather general conditions, long-range…

Populations and Evolution · Quantitative Biology 2014-07-24 Ricardo Martinez-Garcia , Justin M. Calabrese , Emilio Hernandez-Garcia , Cristobal Lopez

Concerns about biodiversity and the long-term stability of forest ecosystems have lead to changing attitudes with respect to plantations. These artificial communities are ubiquitous, yet provide reduced habitat value in comparison to their…

Populations and Evolution · Quantitative Biology 2009-10-05 Tom Adams , Graeme Ackland , Glenn Marion , Colin Edwards

Complex systems have motivated continuing interest from the scientific community, leading to new concepts and methods. Growing systems represent a case of particular interest, as their topological, geometrical, and also dynamical properties…

Social and Information Networks · Computer Science 2024-05-27 Alexandre Benatti , Roberto M. Cesar , Luciano da F. Costa

The innumerable shapes of plant leaves present a challenge to the explanatory power of biophysical theory. A model is needed that can produce these shapes with a small set of parameters. This paper presents a simple model of leaf shape…

Tissues and Organs · Quantitative Biology 2010-04-27 David A. Young

When beneficial mutations are relatively common, competition between multiple unfixed mutations can reduce the rate of fixation in well-mixed asexual populations. We introduce a one dimensional model with a steady accumulation of beneficial…

Populations and Evolution · Quantitative Biology 2013-02-19 Jakub Otwinowski , Stefan Boettcher

Over the last few decades, ecologists have come to appreciate that key ecological patterns, which describe ecological communities at relatively large spatial scales, are not only scale dependent, but also intimately intertwined. The…

Populations and Evolution · Quantitative Biology 2016-09-13 Fabio Peruzzo , Sandro Azaele

The diameter distribution of a given species of deciduous trees in mature, temperate zone forests is well approximated by a Gamma distribution. Here we give new experimental evidence for this conjecture by analyzing deciduous tree size data…

Populations and Evolution · Quantitative Biology 2023-10-17 Szabolcs Kelemen , Máté Józsa , Tibor Hartel , György Csóka , Zoltán Néda

This paper is concerned with a reaction-diffusion single species model with harvesting on $n$-dimensional isotropically growing domain. The model on growing domain is derived and the corresponding comparison principle is proved. The…

Analysis of PDEs · Mathematics 2014-02-18 Zhi Ling , Lai Zhang

We are interested in modelling Darwinian evolution, resulting from the interplay of phenotypic variation and natural selection through ecological interactions. Our models are rooted in the microscopic, stochastic description of a population…

Probability · Mathematics 2016-08-16 Nicolas Champagnat , Régis Ferrière , Sylvie Méléard

Patches of vegetation consist of dense clusters of shrubs, grass, or trees, often found to be circular characteristic size, defined by the properties of the vegetation and terrain. Therefore, vegetation patches can be interpreted as…

Pattern Formation and Solitons · Physics 2017-11-29 Mustapha Tlidi , Ignacio Bordeu , Marcel G. Clerc , Daniel Escaff

In order to avoid disadvantages of monocropping for soil and environment, it is advisable to practice intercropping of various plant species whenever possible. However, intercropping is challenging as it requires a balanced planting…

Computers and Society · Computer Science 2021-12-21 Maurice Günder , Nico Piatkowski , Laura von Rueden , Rafet Sifa , Christian Bauckhage