English
Related papers

Related papers: Objectively Evaluating the Reliability of Cell Typ…

200 papers

Cell type annotation is a critical yet laborious step in single-cell RNA sequencing analysis. We present a trustworthy large language model (LLM)-agent, CellTypeAgent, which integrates LLMs with verification from relevant databases.…

Genomics · Quantitative Biology 2025-05-15 Jiawen Chen , Jianghao Zhang , Huaxiu Yao , Yun Li

Despite growing interest in using large language models (LLMs) to automate annotation, their effectiveness in complex, nuanced, and multi-dimensional labelling tasks remains relatively underexplored. This study focuses on annotation for the…

Information Retrieval · Computer Science 2025-07-02 Leila Tavakoli , Hamed Zamani

Over the past decade, the revolution in single-cell sequencing has enabled the simultaneous molecular profiling of various modalities across thousands of individual cells, allowing scientists to investigate the diverse functions of complex…

Computation and Language · Computer Science 2024-12-05 Junhao Liu , Siwei Xu , Lei Zhang , Jing Zhang

In recent years, single cell RNA sequencing has become a widely used technique to study cellular diversity and function. However, accurately annotating cell types from single cell data has been a challenging task, as it requires extensive…

Genomics · Quantitative Biology 2023-04-07 Zehua Zeng , Hongwu Du

With the rapid development of large language models (LLMs), their application to cell type annotation has drawn increasing attention. However, general-purpose LLMs often face limitations in this specific task due to the lack of guidance…

Computation and Language · Computer Science 2026-04-10 Dezheng Han , Yibin Jia , Ruxiao Chen , Wenjie Han , Shuaishuai Guo , Jianbo Wang

Unstructured text data annotation is foundational to management research. LLMs offer a cost-effective and scalable alternative to human annotation, but they introduce a novel challenge: the annotator itself can be retired. Proprietary…

Computation and Language · Computer Science 2026-05-13 Xiang Cheng , Raveesh Mayya , João Sedoc

Textual data annotation, the process of labeling or tagging text with relevant information, is typically costly, time-consuming, and labor-intensive. While large language models (LLMs) have demonstrated their potential as direct…

Computation and Language · Computer Science 2025-08-12 Yu-Min Tseng , Wei-Lin Chen , Chung-Chi Chen , Hsin-Hsi Chen

Generative large language models (LLMs) can be a powerful tool for augmenting text annotation procedures, but their performance varies across annotation tasks due to prompt quality, text data idiosyncrasies, and conceptual difficulty.…

Computation and Language · Computer Science 2023-06-02 Nicholas Pangakis , Samuel Wolken , Neil Fasching

Large Language Models (LLMs) are increasingly used in empirical software engineering (ESE) to automate or assist annotation tasks such as labeling commits, issues, and qualitative artifacts. Yet the reliability and reproducibility of such…

Software Engineering · Computer Science 2026-01-27 Mia Mohammad Imran , Tarannum Shaila Zaman

As Large Language Model (LLM) capabilities advance, the demand for high-quality annotation of exponentially increasing text corpora has outpaced human capacity, leading to the widespread adoption of LLMs in automatic evaluation and…

Computation and Language · Computer Science 2026-04-02 Jiayu Wang , Junyoung Lee

Large language models offer a scalable alternative to human coding for data annotation tasks, enabling the scale-up of research across data-intensive domains. While LLMs are already achieving near-human accuracy on objective annotation…

Computation and Language · Computer Science 2026-01-21 Zhen Xu , Vedant Khatri , Yijun Dai , Xiner Liu , Siyan Li , Xuanming Zhang , Renzhe Yu

Evaluating the quality of arguments is a crucial aspect of any system leveraging argument mining. However, it is a challenge to obtain reliable and consistent annotations regarding argument quality, as this usually requires domain-specific…

Computation and Language · Computer Science 2024-04-16 Nailia Mirzakhmedova , Marcel Gohsen , Chia Hao Chang , Benno Stein

Large language models (LLMs) are increasingly positioned as scalable tools for annotating educational data, including classroom discourse, interaction logs, and qualitative learning artifacts. Their ability to rapidly summarize…

Artificial Intelligence · Computer Science 2026-03-17 Bakhtawar Ahtisham , Kirk Vanacore , Rene F. Kizilcec

Single-cell RNA sequencing has transformed our ability to identify diverse cell types and their transcriptomic signatures. However, annotating these signatures-especially those involving poorly characterized genes-remains a major challenge.…

In the context of text classification, the financial burden of annotation exercises for creating training data is a critical issue. Active learning techniques, particularly those rooted in uncertainty sampling, offer a cost-effective…

Computation and Language · Computer Science 2024-06-19 Hamidreza Rouzegar , Masoud Makrehchi

Hate speech spreads widely online, harming individuals and communities, making automatic detection essential for large-scale moderation, yet detecting it remains difficult. Part of the challenge lies in subjectivity: what one person flags…

Computation and Language · Computer Science 2025-12-11 Paloma Piot , David Otero , Patricia Martín-Rodilla , Javier Parapar

Choosing a Large Language Model (LLM) for a given task requires comparing many strong candidates, yet standard evaluation relies on costly annotations over fixed evaluation sets. To address this challenge, we develop SELECT-LLM, the first…

Computation and Language · Computer Science 2026-05-26 Yavuz Durmazkeser , Patrik Okanovic , Andreas Kirsch , Torsten Hoefler , Nezihe Merve Gürel

Supervised learning relies on high-quality labeled data, but obtaining such data through human annotation is both expensive and time-consuming. Recent work explores using large language models (LLMs) for annotation, but LLM-generated labels…

Machine Learning · Computer Science 2026-03-23 Lequan Lin , Dai Shi , Andi Han , Feng Chen , Qiuzheng Chen , Jiawen Li , Zhaoyang Li , Jiyuan Li , Zhenbang Sun , Junbin Gao

State-of-the-art supervised NLP models achieve high accuracy but are also susceptible to failures on inputs from low-data regimes, such as domains that are not represented in training data. As an approximation to collecting ground-truth…

Computation and Language · Computer Science 2023-06-29 Parikshit Bansal , Amit Sharma

Political misinformation poses significant challenges to democratic processes, shaping public opinion and trust in media. Manual fact-checking methods face issues of scalability and annotator bias, while machine learning models require…

Computation and Language · Computer Science 2024-11-11 Veronica Chatrath , Marcelo Lotif , Shaina Raza
‹ Prev 1 2 3 10 Next ›