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As patients' access to their doctors' clinical notes becomes common, translating professional, clinical jargon to layperson-understandable language is essential to improve patient-clinician communication. Such translation yields better…

Computation and Language · Computer Science 2019-05-28 Wei-Hung Weng , Yu-An Chung , Peter Szolovits

Understanding a medical conversation between a patient and a physician poses a unique natural language understanding challenge since it combines elements of standard open ended conversation with very domain specific elements that require…

Computation and Language · Computer Science 2020-09-21 Anirudh Joshi , Namit Katariya , Xavier Amatriain , Anitha Kannan

Linking (aligning) biomedical concepts across diverse data sources enables various integrative analyses, but it is challenging due to the discrepancies in concept naming conventions. Various strategies have been developed to overcome this…

Information Retrieval · Computer Science 2024-05-14 Yuzhang Xie , Jiaying Lu , Joyce Ho , Fadi Nahab , Xiao Hu , Carl Yang

In the era of clinical information explosion, a good strategy for clinical text summarization is helpful to improve the clinical workflow. The ideal summarization strategy can preserve important information in the informative but less…

Computation and Language · Computer Science 2020-03-03 Wei-Hung Weng , Yu-An Chung , Schrasing Tong

Medical conversation summarization is integral in capturing information gathered during interactions between patients and physicians. Summarized conversations are used to facilitate patient hand-offs between physicians, and as part of…

Computation and Language · Computer Science 2021-11-30 Varun Nair , Namit Katariya , Xavier Amatriain , Ilya Valmianski , Anitha Kannan

Analyzing vast textual data and summarizing key information from electronic health records imposes a substantial burden on how clinicians allocate their time. Although large language models (LLMs) have shown promise in natural language…

Automated lay summarisation (LS) aims to simplify complex technical documents into a more accessible format to non-experts. Existing approaches using pre-trained language models, possibly augmented with external background knowledge, tend…

Computation and Language · Computer Science 2024-02-22 Zheheng Luo , Qianqian Xie , Sophia Ananiadou

Neural language modeling (LM) has led to significant improvements in several applications, including Automatic Speech Recognition. However, they typically require large amounts of training data, which is not available for many domains and…

Computation and Language · Computer Science 2019-06-05 Navid Rekabsaz , Nikolaos Pappas , James Henderson , Banriskhem K. Khonglah , Srikanth Madikeri

The unstructured nature of clinical notes within electronic health records often conceals vital patient-related information, making it challenging to access or interpret. To uncover this hidden information, specialized Natural Language…

The rapid advancement of large language models (LLMs) has opened new boundaries in the extraction and synthesis of medical knowledge, particularly within evidence synthesis. This paper reviews the state-of-the-art applications of LLMs in…

The paper describes the open Russian medical language understanding benchmark covering several task types (classification, question answering, natural language inference, named entity recognition) on a number of novel text sets. Given the…

Computation and Language · Computer Science 2022-07-14 Pavel Blinov , Arina Reshetnikova , Aleksandr Nesterov , Galina Zubkova , Vladimir Kokh

Health literacy is the central focus of Healthy People 2030, the fifth iteration of the U.S. national goals and objectives. People with low health literacy usually have trouble understanding health information, following post-visit…

Computation and Language · Computer Science 2022-09-15 David Oniani , Sreekanth Sreekumar , Renuk DeAlmeida , Dinuk DeAlmeida , Vivian Hui , Young Ji Lee , Yiye Zhang , Leming Zhou , Yanshan Wang

In the medical domain, identifying and expanding abbreviations in clinical texts is a vital task for both better human and machine understanding. It is a challenging task because many abbreviations are ambiguous especially for intensive…

Computation and Language · Computer Science 2018-06-11 Yue Liu , Tao Ge , Kusum S. Mathews , Heng Ji , Deborah L. McGuinness

External knowledge is often useful for natural language understanding tasks. We introduce a contextual text representation model called Conceptual-Contextual (CC) embeddings, which incorporates structured knowledge into text…

Computation and Language · Computer Science 2020-03-13 Xiao Zhang , Dejing Dou , Ji Wu

Objective: Few-shot learning (FSL) methods require small numbers of labeled instances for training. As many medical topics have limited annotated textual data in practical settings, FSL-based natural language processing (NLP) methods hold…

Computation and Language · Computer Science 2022-05-02 Yao Ge , Yuting Guo , Yuan-Chi Yang , Mohammed Ali Al-Garadi , Abeed Sarker

Several recent works seek to adapt general-purpose large language models (LLMs) and vision-language models (VLMs) for medical applications through continued pretraining on publicly available biomedical corpora. These works typically claim…

Computation and Language · Computer Science 2025-07-01 Daniel P. Jeong , Pranav Mani , Saurabh Garg , Zachary C. Lipton , Michael Oberst

The growth rate in the amount of biomedical documents is staggering. Unlocking information trapped in these documents can enable researchers and practitioners to operate confidently in the information world. Biomedical NER, the task of…

Computation and Language · Computer Science 2021-06-24 Xiang Dai

Language models (LMs) have demonstrated remarkable capabilities in NLP, yet adapting them efficiently and robustly to specific tasks remains challenging. As their scale and complexity grow, fine-tuning LMs on labelled data often…

Computation and Language · Computer Science 2025-06-27 Zhengyan Shi

Disease name recognition and normalization, which is generally called biomedical entity linking, is a fundamental process in biomedical text mining. Recently, neural joint learning of both tasks has been proposed to utilize the mutual…

Computation and Language · Computer Science 2021-04-22 Shogo Ujiie , Hayate Iso , Shuntaro Yada , Shoko Wakamiya , Eiji Aramaki

The goal of text simplification (TS) is to transform difficult text into a version that is easier to understand and more broadly accessible to a wide variety of readers. In some domains, such as healthcare, fully automated approaches cannot…

Computation and Language · Computer Science 2020-10-22 Hoang Van , David Kauchak , Gondy Leroy