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Natural Language Processing (NLP) is increasingly used as a key ingredient in critical decision-making systems such as resume parsers used in sorting a list of job candidates. NLP systems often ingest large corpora of human text, attempting…

Computation and Language · Computer Science 2020-07-14 Esma Wali , Yan Chen , Christopher Mahoney , Thomas Middleton , Marzieh Babaeianjelodar , Mariama Njie , Jeanna Neefe Matthews

We review the scholarly contributions that utilise Natural Language Processing (NLP) techniques to support the design process. Using a heuristic approach, we gathered 223 articles that are published in 32 journals within the period…

Computation and Language · Computer Science 2022-07-05 L Siddharth , Lucienne T. M. Blessing , Jianxi Luo

Protein language models (PLMs) have advanced computational protein science through large-scale pretraining and scalable architectures. In parallel, reinforcement learning (RL) has broadened exploration and enabled precise multi-objective…

In recent years, Natural Language Processing (NLP) has played a significant role in various Artificial Intelligence (AI) applications such as chatbots, text generation, and language translation. The emergence of large language models (LLMs)…

Computation and Language · Computer Science 2024-07-10 Amanda Kau , Xuzeng He , Aishwarya Nambissan , Aland Astudillo , Hui Yin , Amir Aryani

Natural Language Processing (NLP) systems often make use of machine learning techniques that are unfamiliar to end-users who are interested in analyzing clinical records. Although NLP has been widely used in extracting information from…

Human-Computer Interaction · Computer Science 2017-07-10 Gaurav Trivedi , Phuong Pham , Wendy Chapman , Rebecca Hwa , Janyce Wiebe , Harry Hochheiser

Many aspects of the study of protein folding and dynamics have been affected by the recent advances in machine learning. Methods for the prediction of protein structures from their sequences are now heavily based on machine learning tools.…

Biological Physics · Physics 2019-11-25 Frank Noé , Gianni De Fabritiis , Cecilia Clementi

The springing up of Large Language Models (LLMs) has shifted the community from single-task-orientated natural language processing (NLP) research to a holistic end-to-end multi-task learning paradigm. Along this line of research endeavors…

Computation and Language · Computer Science 2023-10-31 Yuanfeng Song , Yuanqin He , Xuefang Zhao , Hanlin Gu , Di Jiang , Haijun Yang , Lixin Fan , Qiang Yang

Large language models (LLMs) are having transformative impacts across a wide range of scientific fields, particularly in the biomedical sciences. Just as the goal of Natural Language Processing is to understand sequences of words, a major…

Genomics · Quantitative Biology 2024-09-24 Gonzalo Benegas , Chengzhong Ye , Carlos Albors , Jianan Canal Li , Yun S. Song

The introduction of large language models and other influential developments in AI-based language processing have led to an evolution in the methods available to quantitatively analyse language data. With the resultant growth of attention…

Recent advances in Pretrained Language Models (PLMs) and Large Language Models (LLMs) have demonstrated transformative capabilities across diverse domains. The field of patent analysis and innovation is not an exception, where natural…

Information Retrieval · Computer Science 2025-06-30 Homaira Huda Shomee , Zhu Wang , Sathya N. Ravi , Sourav Medya

Large language models (LLMs) have shown remarkable abilities in different fields, including standard Natural Language Processing (NLP) tasks. To elicit knowledge from LLMs, prompts play a key role, consisting of natural language…

Computation and Language · Computer Science 2024-10-08 Mohamed Bayan Kmainasi , Rakif Khan , Ali Ezzat Shahroor , Boushra Bendou , Maram Hasanain , Firoj Alam

We propose a bias-aware methodology to engage with power relations in natural language processing (NLP) research. NLP research rarely engages with bias in social contexts, limiting its ability to mitigate bias. While researchers have…

Computation and Language · Computer Science 2020-11-12 Lucy Havens , Melissa Terras , Benjamin Bach , Beatrice Alex

Natural language processing (NLP) has significantly influenced scientific domains beyond human language, including protein engineering, where pre-trained protein language models (PLMs) have demonstrated remarkable success. However,…

Computation and Language · Computer Science 2025-03-20 Yang Tan , Chen Liu , Jingyuan Gao , Banghao Wu , Mingchen Li , Ruilin Wang , Lingrong Zhang , Huiqun Yu , Guisheng Fan , Liang Hong , Bingxin Zhou

Pre-trained language models (PLMs) have made significant advances in natural language inference (NLI) tasks, however their sensitivity to textual perturbations and dependence on large datasets indicate an over-reliance on shallow…

Machine Learning · Computer Science 2025-02-14 Mingyue Liu , Ryo Ueda , Zhen Wan , Katsumi Inoue , Chris G. Willcocks

This paper investigates the utilization of Large Language Models (LLMs) for solving complex linguistic puzzles, a domain requiring advanced reasoning and adept translation capabilities akin to human cognitive processes. We explore specific…

Computation and Language · Computer Science 2025-02-04 Zheng-Lin Lin , Yu-Fei Shih , Shu-Kai Hsieh

Natural Language Processing (NLP) is now a cornerstone of requirements automation. One compelling factor behind the growing adoption of NLP in Requirements Engineering (RE) is the prevalent use of natural language (NL) for specifying…

Software Engineering · Computer Science 2024-07-17 Mehrdad Sabetzadeh , Chetan Arora

When evaluating an answer choice for Reading Comprehension task, other answer choices available for the question and the answers of related questions about the same paragraph often provide valuable information. In this paper, we propose a…

Computation and Language · Computer Science 2021-01-01 Rajkumar Pujari , Dan Goldwasser

The field of protein-ligand pose prediction has seen significant advances in recent years, with machine learning-based methods now being commonly used in lieu of classical docking methods or even to predict all-atom protein-ligand complex…

Biomolecules · Quantitative Biology 2024-10-01 David Errington , Constantin Schneider , Cédric Bouysset , Frédéric A. Dreyer

Natural language processing (NLP) plays a significant role in tools for the COVID-19 pandemic response, from detecting misinformation on social media to helping to provide accurate clinical information or summarizing scientific research.…

Computation and Language · Computer Science 2021-08-25 Alexandra Sasha Luccioni , Katherine Hoffmann Pham , Cynthia Sin Nga Lam , Joseph Aylett-Bullock , Miguel Luengo-Oroz

Do machines and humans process language in similar ways? Recent research has hinted at the affirmative, showing that human neural activity can be effectively predicted using the internal representations of language models (LMs). Although…

Computation and Language · Computer Science 2025-01-15 Yuchen Zhou , Emmy Liu , Graham Neubig , Michael J. Tarr , Leila Wehbe