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We propose a segmentation framework that uses deep neural networks and introduce two innovations. First, we describe a biophysics-based domain adaptation method. Second, we propose an automatic method to segment white and gray matter, and…

Computer Vision and Pattern Recognition · Computer Science 2018-10-16 Amir Gholami , Shashank Subramanian , Varun Shenoy , Naveen Himthani , Xiangyu Yue , Sicheng Zhao , Peter Jin , George Biros , Kurt Keutzer

Gliomas are the most common malignant primary brain tumors in adults and one of the deadliest types of cancer. There are many challenges in treatment and monitoring due to the genetic diversity and high intrinsic heterogeneity in…

Computer Vision and Pattern Recognition · Computer Science 2024-05-29 Maria Correia de Verdier , Rachit Saluja , Louis Gagnon , Dominic LaBella , Ujjwall Baid , Nourel Hoda Tahon , Martha Foltyn-Dumitru , Jikai Zhang , Maram Alafif , Saif Baig , Ken Chang , Gennaro D'Anna , Lisa Deptula , Diviya Gupta , Muhammad Ammar Haider , Ali Hussain , Michael Iv , Marinos Kontzialis , Paul Manning , Farzan Moodi , Teresa Nunes , Aaron Simon , Nico Sollmann , David Vu , Maruf Adewole , Jake Albrecht , Udunna Anazodo , Rongrong Chai , Verena Chung , Shahriar Faghani , Keyvan Farahani , Anahita Fathi Kazerooni , Eugenio Iglesias , Florian Kofler , Hongwei Li , Marius George Linguraru , Bjoern Menze , Ahmed W. Moawad , Yury Velichko , Benedikt Wiestler , Talissa Altes , Patil Basavasagar , Martin Bendszus , Gianluca Brugnara , Jaeyoung Cho , Yaseen Dhemesh , Brandon K. K. Fields , Filip Garrett , Jaime Gass , Lubomir Hadjiiski , Jona Hattangadi-Gluth , Christopher Hess , Jessica L. Houk , Edvin Isufi , Lester J. Layfield , George Mastorakos , John Mongan , Pierre Nedelec , Uyen Nguyen , Sebastian Oliva , Matthew W. Pease , Aditya Rastogi , Jason Sinclair , Robert X. Smith , Leo P. Sugrue , Jonathan Thacker , Igor Vidic , Javier Villanueva-Meyer , Nathan S. White , Mariam Aboian , Gian Marco Conte , Anders Dale , Mert R. Sabuncu , Tyler M. Seibert , Brent Weinberg , Aly Abayazeed , Raymond Huang , Sevcan Turk , Andreas M. Rauschecker , Nikdokht Farid , Philipp Vollmuth , Ayman Nada , Spyridon Bakas , Evan Calabrese , Jeffrey D. Rudie

A cascade of fully convolutional neural networks is proposed to segment multi-modal Magnetic Resonance (MR) images with brain tumor into background and three hierarchical regions: whole tumor, tumor core and enhancing tumor core. The…

Computer Vision and Pattern Recognition · Computer Science 2018-07-23 Guotai Wang , Wenqi Li , Sebastien Ourselin , Tom Vercauteren

The segmentation of lesions in Moderate to Severe Traumatic Brain Injury (msTBI) presents a significant challenge in neuroimaging due to the diverse characteristics of these lesions, which vary in size, shape, and distribution across brain…

Computer Vision and Pattern Recognition · Computer Science 2025-04-10 Constantin Ulrich , Tassilo Wald , Fabian Isensee , Klaus H. Maier-Hein

Automated segmentation of brain tumors from 3D magnetic resonance images (MRIs) is necessary for the diagnosis, monitoring, and treatment planning of the disease. Manual delineation practices require anatomical knowledge, are expensive,…

Computer Vision and Pattern Recognition · Computer Science 2018-11-20 Andriy Myronenko

Brain tumor segmentation based on multi-modal magnetic resonance imaging (MRI) plays a pivotal role in assisting brain cancer diagnosis, treatment, and postoperative evaluations. Despite the achieved inspiring performance by existing…

Image and Video Processing · Electrical Eng. & Systems 2022-11-16 Haoran Li , Cheng Li , Weijian Huang , Xiawu Zheng , Yan Xi , Shanshan Wang

Brain tumor segmentation remains a significant challenge, particularly in the context of multi-modal magnetic resonance imaging (MRI) where missing modality images are common in clinical settings, leading to reduced segmentation accuracy.…

Image and Video Processing · Electrical Eng. & Systems 2024-06-14 Zhongao Sun , Jiameng Li , Yuhan Wang , Jiarong Cheng , Qing Zhou , Chun Li

Semantic segmentation of brain tumors is a fundamental medical image analysis task involving multiple MRI imaging modalities that can assist clinicians in diagnosing the patient and successively studying the progression of the malignant…

Image and Video Processing · Electrical Eng. & Systems 2022-01-05 Ali Hatamizadeh , Vishwesh Nath , Yucheng Tang , Dong Yang , Holger Roth , Daguang Xu

Accurate and efficient segmentation of brain tumors is critical for diagnosis, treatment planning, and monitoring in clinical practice. In this study, we present an enhanced ResUNet architecture for automatic brain tumor segmentation,…

Image and Video Processing · Electrical Eng. & Systems 2025-01-22 Majid Behzadpour , Ebrahim Azizi , Kai Wu , Bengie L. Ortiz

Transformer, benefiting from global (long-range) information modeling using self-attention mechanism, has been successful in natural language processing and computer vision recently. Convolutional Neural Networks, capable of capturing local…

Image and Video Processing · Electrical Eng. & Systems 2022-05-18 Jiangyun Li , Wenxuan Wang , Chen Chen , Tianxiang Zhang , Sen Zha , Jing Wang , Hong Yu

Automatic MRI brain tumor segmentation is of vital importance for the disease diagnosis, monitoring, and treatment planning. In this paper, we propose a two-stage encoder-decoder based model for brain tumor subregional segmentation.…

Image and Video Processing · Electrical Eng. & Systems 2021-05-18 Chenggang Lyu , Hai Shu

Accurate and reliable brain tumor segmentation is a critical component in cancer diagnosis, treatment planning, and treatment outcome evaluation. Build upon successful deep learning techniques, a novel brain tumor segmentation method is…

Computer Vision and Pattern Recognition · Computer Science 2017-11-13 Xiaomei Zhao , Yihong Wu , Guidong Song , Zhenye Li , Yazhuo Zhang , Yong Fan

Brain tumor is one of the leading causes of cancer death. The high-grade brain tumors are easier to recurrent even after standard treatment. Therefore, developing a method to predict brain tumor recurrence location plays an important role…

Image and Video Processing · Electrical Eng. & Systems 2023-04-28 Tongxue Zhou , Alexandra Noeuveglise , Romain Modzelewski , Fethi Ghazouani , Sébastien Thureau , Maxime Fontanilles , Su Ruan

Accurate brain tumor diagnosis relies on the assessment of multiple Magnetic Resonance Imaging (MRI) sequences. However, in clinical practice, the acquisition of certain sequences may be affected by factors like motion artifacts or contrast…

Image and Video Processing · Electrical Eng. & Systems 2025-05-30 Moinak Bhattacharya , Saumya Gupta , Annie Singh , Chao Chen , Gagandeep Singh , Prateek Prasanna

Accurate brain tumor segmentation from multi-modal magnetic resonance imaging (MRI) is a prerequisite for precise radiotherapy planning and surgical navigation. While recent Transformer-based models such as Swin UNETR have achieved…

Computer Vision and Pattern Recognition · Computer Science 2026-01-27 Yan Zhou , Zhen Huang , Yingqiu Li , Yue Ouyang , Suncheng Xiang , Zehua Wang

We propose a Transformer architecture for volumetric segmentation, a challenging task that requires keeping a complex balance in encoding local and global spatial cues, and preserving information along all axes of the volume. Encoder of the…

Image and Video Processing · Electrical Eng. & Systems 2022-07-04 Himashi Peiris , Munawar Hayat , Zhaolin Chen , Gary Egan , Mehrtash Harandi

The translation of AI-generated brain metastases (BM) segmentation into clinical practice relies heavily on diverse, high-quality annotated medical imaging datasets. The BraTS-METS 2023 challenge has gained momentum for testing and…

Other Quantitative Biology · Quantitative Biology 2024-12-10 Ahmed W. Moawad , Anastasia Janas , Ujjwal Baid , Divya Ramakrishnan , Rachit Saluja , Nader Ashraf , Nazanin Maleki , Leon Jekel , Nikolay Yordanov , Pascal Fehringer , Athanasios Gkampenis , Raisa Amiruddin , Amirreza Manteghinejad , Maruf Adewole , Jake Albrecht , Udunna Anazodo , Sanjay Aneja , Syed Muhammad Anwar , Timothy Bergquist , Veronica Chiang , Verena Chung , Gian Marco Conte , Farouk Dako , James Eddy , Ivan Ezhov , Nastaran Khalili , Keyvan Farahani , Juan Eugenio Iglesias , Zhifan Jiang , Elaine Johanson , Anahita Fathi Kazerooni , Florian Kofler , Kiril Krantchev , Dominic LaBella , Koen Van Leemput , Hongwei Bran Li , Marius George Linguraru , Xinyang Liu , Zeke Meier , Bjoern H Menze , Harrison Moy , Klara Osenberg , Marie Piraud , Zachary Reitman , Russell Takeshi Shinohara , Chunhao Wang , Benedikt Wiestler , Walter Wiggins , Umber Shafique , Klara Willms , Arman Avesta , Khaled Bousabarah , Satrajit Chakrabarty , Nicolo Gennaro , Wolfgang Holler , Manpreet Kaur , Pamela LaMontagne , MingDe Lin , Jan Lost , Daniel S. Marcus , Ryan Maresca , Sarah Merkaj , Gabriel Cassinelli Pedersen , Marc von Reppert , Aristeidis Sotiras , Oleg Teytelboym , Niklas Tillmans , Malte Westerhoff , Ayda Youssef , Devon Godfrey , Scott Floyd , Andreas Rauschecker , Javier Villanueva-Meyer , Irada Pfluger , Jaeyoung Cho , Martin Bendszus , Gianluca Brugnara , Justin Cramer , Gloria J. Guzman Perez-Carillo , Derek R. Johnson , Anthony Kam , Benjamin Yin Ming Kwan , Lillian Lai , Neil U. Lall , Fatima Memon , Mark Krycia , Satya Narayana Patro , Bojan Petrovic , Tiffany Y. So , Gerard Thompson , Lei Wu , E. Brooke Schrickel , Anu Bansal , Frederik Barkhof , Cristina Besada , Sammy Chu , Jason Druzgal , Alexandru Dusoi , Luciano Farage , Fabricio Feltrin , Amy Fong , Steve H. Fung , R. Ian Gray , Ichiro Ikuta , Michael Iv , Alida A. Postma , Amit Mahajan , David Joyner , Chase Krumpelman , Laurent Letourneau-Guillon , Christie M. Lincoln , Mate E. Maros , Elka Miller , Fanny Moron , Esther A. Nimchinsky , Ozkan Ozsarlak , Uresh Patel , Saurabh Rohatgi , Atin Saha , Anousheh Sayah , Eric D. Schwartz , Robert Shih , Mark S. Shiroishi , Juan E. Small , Manoj Tanwar , Jewels Valerie , Brent D. Weinberg , Matthew L. White , Robert Young , Vahe M. Zohrabian , Aynur Azizova , Melanie Maria Theresa Bruseler , Mohanad Ghonim , Mohamed Ghonim , Abdullah Okar , Luca Pasquini , Yasaman Sharifi , Gagandeep Singh , Nico Sollmann , Theodora Soumala , Mahsa Taherzadeh , Philipp Vollmuth , Martha Foltyn-Dumitru , Ajay Malhotra , Aly H. Abayazeed , Francesco Dellepiane , Philipp Lohmann , Victor M. Perez-Garcia , Hesham Elhalawani , Maria Correia de Verdier , Sanaria Al-Rubaiey , Rui Duarte Armindo , Kholod Ashraf , Moamen M. Asla , Mohamed Badawy , Jeroen Bisschop , Nima Broomand Lomer , Jan Bukatz , Jim Chen , Petra Cimflova , Felix Corr , Alexis Crawley , Lisa Deptula , Tasneem Elakhdar , Islam H. Shawali , Shahriar Faghani , Alexandra Frick , Vaibhav Gulati , Muhammad Ammar Haider , Fatima Hierro , Rasmus Holmboe Dahl , Sarah Maria Jacobs , Kuang-chun Jim Hsieh , Sedat G. Kandemirli , Katharina Kersting , Laura Kida , Sofia Kollia , Ioannis Koukoulithras , Xiao Li , Ahmed Abouelatta , Aya Mansour , Ruxandra-Catrinel Maria-Zamfirescu , Marcela Marsiglia , Yohana Sarahi Mateo-Camacho , Mark McArthur , Olivia McDonnell , Maire McHugh , Mana Moassefi , Samah Mostafa Morsi , Alexander Munteanu , Khanak K. Nandolia , Syed Raza Naqvi , Yalda Nikanpour , Mostafa Alnoury , Abdullah Mohamed Aly Nouh , Francesca Pappafava , Markand D. Patel , Samantha Petrucci , Eric Rawie , Scott Raymond , Borna Roohani , Sadeq Sabouhi , Laura M. Sanchez-Garcia , Zoe Shaked , Pokhraj P. Suthar , Talissa Altes , Edvin Isufi , Yaseen Dhemesh , Jaime Gass , Jonathan Thacker , Abdul Rahman Tarabishy , Benjamin Turner , Sebastiano Vacca , George K. Vilanilam , Daniel Warren , David Weiss , Fikadu Worede , Sara Yousry , Wondwossen Lerebo , Alejandro Aristizabal , Alexandros Karargyris , Hasan Kassem , Sarthak Pati , Micah Sheller , Katherine E. Link , Evan Calabrese , Nourel hoda Tahon , Ayman Nada , Yuri S. Velichko , Spyridon Bakas , Jeffrey D. Rudie , Mariam Aboian

Deep convolutional neural network (CNN) achieves remarkable performance for medical image analysis. UNet is the primary source in the performance of 3D CNN architectures for medical imaging tasks, including brain tumor segmentation. The…

Image and Video Processing · Electrical Eng. & Systems 2020-11-30 Parvez Ahmad , Saqib Qamar , Linlin Shen , Adnan Saeed

Brain tumors are one of the deadliest forms of cancer with a mortality rate of over 80%. A quick and accurate diagnosis is crucial to increase the chance of survival. However, in medical analysis, the manual annotation and segmentation of a…

Image and Video Processing · Electrical Eng. & Systems 2024-03-18 Zachary Schwehr , Sriman Achanta

Deep learning methods for brain tumor segmentation are typically trained in an ad hoc fashion on all available data. Brain tumors are tremendously heterogeneous in image appearance and labeled training data is limited. We argue that…

Image and Video Processing · Electrical Eng. & Systems 2019-07-31 Raphael Meier , Michael Rebsamen , Urspeter Knecht , Mauricio Reyes , Roland Wiest , Richard McKinley