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Modern biological science produces vast amounts of genomic sequence data. This is fuelling the need for efficient algorithms for sequence compression and analysis. Data compression and the associated techniques coming from information…

Data Structures and Algorithms · Computer Science 2011-09-05 Heba Afify , Muhammad Islam , Manal Abdel Wahed

We develop extreme data compression for use in Bayesian model comparison via the MOPED algorithm, as well as more general score compression. We find that Bayes factors from data compressed with the MOPED algorithm are identical to those…

Instrumentation and Methods for Astrophysics · Physics 2023-07-17 Alan F. Heavens , Arrykrishna Mootoovaloo , Roberto Trotta , Elena Sellentin

This work describes the principled design of a theoretical framework leading to fast and accurate algorithmic information measures on finite multisets of finite strings by means of compression. One distinctive feature of our approach is to…

Information Theory · Computer Science 2025-02-25 François Cayre

We consider mixtures of $k\geq 2$ Gaussian components with unknown means and unknown covariance (identical for all components) that are well-separated, i.e., distinct components have statistical overlap at most $k^{-C}$ for a large enough…

Machine Learning · Computer Science 2023-06-09 Rares-Darius Buhai , David Steurer

Deep neural networks (DNNs) frequently contain far more weights, represented at a higher precision, than are required for the specific task which they are trained to perform. Consequently, they can often be compressed using techniques such…

Machine Learning · Computer Science 2020-12-03 Vinu Joseph , Saurav Muralidharan , Animesh Garg , Michael Garland , Ganesh Gopalakrishnan

In-memory graph-based approximate nearest neighbor (ANN) search has superior search performance but incurs significant memory footprint. Disk-based methods reduce memory usage but suffer from high disk access latency. A common challenge is…

Databases · Computer Science 2026-05-08 Ziwen Song , Bin Wang , Xiaochun Yang , Junhua Zhang

Big data, with NxP dimension where N is extremely large, has created new challenges for data analysis, particularly in the realm of creating meaningful clusters of data. Clustering techniques, such as K-means or hierarchical clustering are…

This paper provides a new similarity detection algorithm. Given an input set of multi-dimensional data points, where each data point is assumed to be multi-dimensional, and an additional reference data point for similarity finding, the…

Artificial Intelligence · Computer Science 2017-07-12 Yariv Aizenbud , Amir Averbuch , Gil Shabat , Guy Ziv

Despite recent advances in automated machine learning, model selection is still a complex and computationally intensive process. For Gaussian processes (GPs), selecting the kernel is a crucial task, often done manually by the expert.…

Machine Learning · Computer Science 2022-10-24 Matthias Bitzer , Mona Meister , Christoph Zimmer

In this paper, we establish novel data-dependent upper bounds on the generalization error through the lens of a "variable-size compressibility" framework that we introduce newly here. In this framework, the generalization error of an…

Machine Learning · Statistics 2024-06-12 Milad Sefidgaran , Abdellatif Zaidi

We propose tensorial neural networks (TNNs), a generalization of existing neural networks by extending tensor operations on low order operands to those on high order ones. The problem of parameter learning is challenging, as it corresponds…

Machine Learning · Statistics 2018-12-11 Jiahao Su , Jingling Li , Bobby Bhattacharjee , Furong Huang

In this paper, we first propose a new iterative algorithm, called the K-sets+ algorithm for clustering data points in a semi-metric space, where the distance measure does not necessarily satisfy the triangular inequality. We show that the…

Data Structures and Algorithms · Computer Science 2017-05-12 Cheng-Shang Chang , Chia-Tai Chang , Duan-Shin Lee , Li-Heng Liou

In some memory-constrained settings like IoT devices and over-the-network data pipelines, it can be advantageous to have smaller contextual embeddings. We investigate the efficacy of projecting contextual embedding data (BERT) onto a…

Machine Learning · Computer Science 2021-04-26 Rishi Jha , Kai Mihata

The search for suitable datasets is the critical "first step" in data-driven research, but it remains a great challenge. Researchers often need to search for datasets based on high-level task descriptions. However, existing search systems…

Databases · Computer Science 2025-12-18 Zixin Wei , Yucan Guo , Jinyang Li , Xiaolin Han , Xiaolong Jin , Chenhao Ma

Dimensionality reduction is critical across various domains of science including neuroscience. Probabilistic Principal Component Analysis (PPCA) is a prominent dimensionality reduction method that provides a probabilistic approach unlike…

Machine Learning · Computer Science 2025-09-24 Han-Lin Hsieh , Maryam M. Shanechi

Large-scale Nearest Neighbor (NN) search, though widely utilized in the similarity search field, remains challenged by the computational limitations inherent in processing large scale data. In an effort to decrease the computational expense…

Machine Learning · Computer Science 2026-04-24 Ashley N. Abraham , Andrew Strelzoff , Haley R. Dozier , Althea C. Henslee , Mark A. Chappell

Compression techniques are essential in distributed optimization and learning algorithms with high-dimensional model parameters, particularly in scenarios with tight communication constraints such as limited bandwidth. This article presents…

Optimization and Control · Mathematics 2025-10-27 Souvik Das , Subhrakanti Dey

We formulate and optimally solve a new generalized Set Similarity Search problem, which assumes the size of the database and query sets are known in advance. By creating polylog copies of our data-structure, we optimally solve any symmetric…

Data Structures and Algorithms · Computer Science 2020-04-21 Thomas Dybdahl Ahle , Jakob Bæk Tejs Knudsen

The disjunctively constrained knapsack problem consists in packing a subset of pairwisely compatible items in a capacity-constrained knapsack such that the total profit of the selected items is maximized while satisfying the knapsack…

Neural and Evolutionary Computing · Computer Science 2021-01-14 Zequn Wei , Jin-Kao Hao

Exascale computing promises quantities of data too large to efficiently store and transfer across networks in order to be able to analyze and visualize the results. We investigate Compressive Sensing (CS) as a way to reduce the size of the…

Information Theory · Computer Science 2015-08-27 Maher Salloum , Nathan Fabian , David M. Hensinger , Jeremy A. Templeton
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