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Many microorganisms swim in a highly heterogeneous environment with obstacles such as fibers or polymers. To better understand how this environment affects microorganism swimming, we study propulsion of a cylinder or filament in a fluid…

Fluid Dynamics · Physics 2016-04-13 Nguyenho Ho , Karin Leiderman , Sarah D. Olson

Swimming by shape changes at low Reynolds number is widely used in biology and understanding how the efficiency of movement depends on the geometric pattern of shape changes is important to understand swimming of microorganisms and in…

Fluid Dynamics · Physics 2015-07-31 Qixuan Wang , Hans G. Othmer

We describe a method for searching the optimal hyper-parameters in reservoir computing, which consists of a Gaussian process with Bayesian optimization. It provides an alternative to other frequently used optimization methods such as grid,…

Machine Learning · Computer Science 2017-06-15 Jan Yperman , Thijs Becker

The swimming of a two-sphere system oscillating in a viscous fluidis studied on the basis of simplified equations of motion which take account of both friction and inertial effects. In the model the friction follows from an Oseen…

Soft Condensed Matter · Physics 2022-08-17 B. U. Felderhof

We develop a method for optimization in shape spaces, i.e., sets of surfaces modulo re-parametrization. Unlike previously proposed gradient flows, we achieve superlinear convergence rates through a subtle approximation of the shape Hessian,…

Computer Vision and Pattern Recognition · Computer Science 2014-04-15 J. Balzer , S. Soatto

The computational design of soft underwater swimmers is challenging because of the high degrees of freedom in soft-body modeling. In this paper, we present a differentiable pipeline for co-designing a soft swimmer's geometry and controller.…

Machine Learning · Computer Science 2021-05-07 Pingchuan Ma , Tao Du , John Z. Zhang , Kui Wu , Andrew Spielberg , Robert K. Katzschmann , Wojciech Matusik

Pin fins are imperative in the cooling of turbine blades. The designs of pin fins, therefore, have seen significant research in the past. With the developments in metal additive manufacturing, novel design approaches toward complex…

Fluid Dynamics · Physics 2023-01-31 Susheel Dharmadhikari , Reid A. Berdanier , Karen A. Thole , Amrita Basak

We investigate the effects of helical swimmer shape (i.e., helical pitch angle and tail thickness) on swimming dynamics in a constant viscosity viscoelastic (Boger) fluid via a combination of particle tracking velocimetry, particle image…

Soft Condensed Matter · Physics 2022-06-01 S. Wu , T. Solano , K. Shoele , H. Mohammadigoushki

Incorporating shape information is essential for the delineation of many organs and anatomical structures in medical images. While previous work has mainly focused on parametric spatial transformations applied on reference template shapes,…

Computer Vision and Pattern Recognition · Computer Science 2021-05-06 Wang Zihao , Demarcy Thomas , Vandersteen Clair , Gnansia Dan , Raffaelli Charles , Guevara Nicolas , Delingette Hervé

In this paper, we describe a novel shape classification method which is embedded in the Bayesian paradigm. We discuss the modelling and the resulting shape classification algorithm for two and three dimensional data shapes. We conclude by…

Methodology · Statistics 2018-03-01 Thomai Tsiftsi

In this paper we study a mathematical model of one-dimensional swimmers performing a planar motion while fully immersed in a viscous fluid. The swimmers are assumed to be of small size, and all inertial effects are neglected. Hydrodynamic…

Optimization and Control · Mathematics 2014-04-25 Gianni Dal Maso , Antonio DeSimone , Marco Morandotti

We present a new approach to discretizing shape optimization problems that generalizes standard moving mesh methods to higher-order mesh deformations and that is naturally compatible with higher-order finite element discretizations of…

Numerical Analysis · Mathematics 2017-06-13 A. Paganini , F. Wechsung , P. E. Farrell

The hydrodynamics of a flagellated microorganism is investigated when swimming close to a planar free-slip surface by means of numerical solu- tions of the Stokes equations obtained via a Boundary Element Method. Depending on the initial…

Fluid Dynamics · Physics 2017-03-31 Daniela Pimponi , Mauro Chinappi , Paolo Gualtieri , Carlo Massimo Casciola

In this paper, we propose a shape optimization pipeline for propeller blades, applied to naval applications. The geometrical features of a blade are exploited to parametrize it, allowing to obtain deformed blades by perturbating their…

Optimization and Control · Mathematics 2024-01-17 Anna Ivagnes , Nicola Demo , Gianluigi Rozza

We suggest a novel shape matching algorithm for three-dimensional surface meshes of disk or sphere topology. The method is based on the physical theory of nonlinear elasticity and can hence handle large rotations and deformations.…

Computational Geometry · Computer Science 2015-07-29 Konrad Simon , Sameer Sheorey , David Jacobs , Ronen Basri

Finding the fastest path to a desired destination is a vitally important task for microorganisms moving in a fluid flow. We study this problem by building an analytical formalism for overdamped microswimmers on curved manifolds and…

Biological Physics · Physics 2021-05-26 Lorenzo Piro , Evelyn Tang , Ramin Golestanian

Many eukaryotic microorganisms propelled by multiple flagella can swim very rapidly with distinct gaits. Here, we model a three-dimensional mutiflagellate swimming strategy, resembling the microalgae, and investigate the effects of…

Soft Condensed Matter · Physics 2023-10-17 Shiyuan Hu , Fanlong Meng

In the reduced order modeling (ROM) framework, the solution of a parametric partial differential equation is approximated by combining the high-fidelity solutions of the problem at hand for several properly chosen configurations. Examples…

Numerical Analysis · Mathematics 2019-05-16 Nicola Demo , Marco Tezzele , Andrea Mola , Gianluigi Rozza

Microswimmers can acquire information on the surrounding fluid by sensing mechanical queues. They can then navigate in response to these signals. We analyse this navigation by combining deep reinforcement learning with direct numerical…

Fluid Dynamics · Physics 2023-06-21 Krongtum Sankaewtong , John J. Molina , Matthew S. Turner , Ryoichi Yamamoto

Microorganisms are rarely found in Nature swimming freely in an unbounded fluid. Instead, they typically encounter other organisms, hard walls, or deformable boundaries such as free interfaces or membranes. Hydrodynamic interactions between…

Fluid Dynamics · Physics 2013-10-21 Marcelo A. Dias , Thomas R. Powers