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Link prediction is one of the fundamental problems in network analysis. In many applications, notably in genetics, a partially observed network may not contain any negative examples of absent edges, which creates a difficulty for many…

Machine Learning · Statistics 2013-01-30 Yunpeng Zhao , Elizaveta Levina , Ji Zhu

Using message-passing graph neural networks (MPNNs) for node and link prediction is crucial in various scientific and industrial domains, which has led to the development of diverse MPNN architectures. Besides working well in practical…

Machine Learning · Computer Science 2025-10-31 Antonis Vasileiou , Timo Stoll , Christopher Morris

Link prediction, a fundamental task on graphs, has proven indispensable in various applications, e.g., friend recommendation, protein analysis, and drug interaction prediction. However, since datasets span a multitude of domains, they could…

Social and Information Networks · Computer Science 2024-11-11 Haitao Mao , Juanhui Li , Harry Shomer , Bingheng Li , Wenqi Fan , Yao Ma , Tong Zhao , Neil Shah , Jiliang Tang

Here we present a holistic approach for data exploration on dense knowledge graphs as a novel approach with a proof-of-concept in biomedical research. Knowledge graphs are increasingly becoming a vital factor in knowledge mining and…

Artificial Intelligence · Computer Science 2019-12-16 Jens Dörpinghaus , Alexander Apke , Vanessa Lage-Rupprecht , Andreas Stefan

Link prediction is a popular research topic in network analysis. In the last few years, new techniques based on graph embedding have emerged as a powerful alternative to heuristics. In this article, we study the problem of systematic biases…

Social and Information Networks · Computer Science 2018-11-30 Aakash Sinha , Rémy Cazabet , Rémi Vaudaine

Link Prediction is an important and well-studied problem for social networks. Given a snapshot of a graph, the link prediction problem predicts which new interactions between members are most likely to occur in the near future. As networks…

Cryptography and Security · Computer Science 2019-02-01 Laltu Sardar , Sushmita Ruj

Bipartite networks serve as highly suitable models to represent systems involving interactions between two distinct types of entities, such as online dating platforms, job search services, or ecommerce websites. These models can be…

Social and Information Networks · Computer Science 2025-02-11 Şükrü Demir İnan Özer , Günce Keziban Orman , Vincent Labatut

Graph Machine Learning (GML) has numerous applications, such as node/graph classification and link prediction, in real-world domains. Providing human-understandable explanations for GML models is a challenging yet fundamental task to foster…

Machine Learning · Computer Science 2023-08-04 Claudio Borile , Alan Perotti , André Panisson

Predicting missing links between entities in a knowledge graph is a fundamental task to deal with the incompleteness of data on the Web. Knowledge graph embeddings map nodes into a vector space to predict new links, scoring them according…

Artificial Intelligence · Computer Science 2023-02-14 Cosimo Gregucci , Mojtaba Nayyeri , Daniel Hernández , Steffen Staab

Knowledge Graphs have been widely used to represent facts in a structured format. Due to their large scale applications, knowledge graphs suffer from being incomplete. The relation prediction task obtains knowledge graph completion by…

Computation and Language · Computer Science 2024-05-07 Sakher Khalil Alqaaidi , Krzysztof Kochut

Node classification and link prediction are widely studied in graph representation learning. While both transductive node classification and link prediction operate over a single input graph, they have so far been studied separately. Node…

Machine Learning · Computer Science 2021-08-31 Ralph Abboud , İsmail İlkan Ceylan

Knowledge graphs have emerged as an important model for studying complex multi-relational data. This has given rise to the construction of numerous large scale but incomplete knowledge graphs encoding information extracted from various…

Machine Learning · Computer Science 2018-07-24 Rakshit Trivedi , Bunyamin Sisman , Jun Ma , Christos Faloutsos , Hongyuan Zha , Xin Luna Dong

Rule mining on knowledge graphs allows for explainable link prediction. Contrarily, embedding-based methods for link prediction are well known for their generalization capabilities, but their predictions are not interpretable. Several…

Artificial Intelligence · Computer Science 2024-06-17 N'Dah Jean Kouagou , Arif Yilmaz , Michel Dumontier , Axel-Cyrille Ngonga Ngomo

Link prediction -- a task of distinguishing actual hidden edges from random unconnected node pairs -- is one of the quintessential tasks in graph machine learning. Despite being widely accepted as a universal benchmark and a downstream task…

Social and Information Networks · Computer Science 2024-05-30 Rachith Aiyappa , Xin Wang , Munjung Kim , Ozgur Can Seckin , Jisung Yoon , Yong-Yeol Ahn , Sadamori Kojaku

Multiplex networks allow us to study a variety of complex systems where nodes connect to each other in multiple ways, for example friend, family, and co-worker relations in social networks. Link prediction is the branch of network analysis…

Social and Information Networks · Computer Science 2022-11-23 Michele Coscia , Christian Borgelt , Michael Szell

The message-passing mechanism underlying Graph Neural Networks (GNNs) is not naturally suited for heterophilic datasets, where adjacent nodes often have different labels. Most solutions to this problem remain confined to the task of node…

Machine Learning · Computer Science 2025-06-30 Andrea Giuseppe Di Francesco , Francesco Caso , Maria Sofia Bucarelli , Fabrizio Silvestri

Identifying critical nodes and links in graphs is a crucial task. These nodes/links typically represent critical elements/communication links that play a key role in a system's performance. However, a majority of the methods available in…

Social and Information Networks · Computer Science 2022-05-31 Sai Munikoti , Laya Das , Balasubramaniam Natarajan

Motivation: Biological data and knowledge bases increasingly rely on Semantic Web technologies and the use of knowledge graphs for data integration, retrieval and federated queries. In the past years, feature learning methods that are…

Quantitative Methods · Quantitative Biology 2017-05-01 Mona Alshahrani , Mohammed Asif Khan , Omar Maddouri , Akira R Kinjo , Núria Queralt-Rosinach , Robert Hoehndorf

The success of deep learning has revolutionized many fields of research including areas of computer vision, text and speech processing. Enormous research efforts have led to numerous methods that are capable of efficiently analyzing data,…

Machine Learning · Computer Science 2020-07-20 Christoph Heindl

Link prediction is widely used in a variety of industrial applications, such as merchant recommendation, fraudulent transaction detection, and so on. However, it's a great challenge to train and deploy a link prediction model on…

Social and Information Networks · Computer Science 2020-03-11 Dalong Zhang , Xianzheng Song , Ziqi Liu , Zhiqiang Zhang , Xin Huang , Lin Wang , Jun Zhou
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