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Graph convolution networks, like message passing graph convolution networks (MPGCNs), have been a powerful tool in representation learning of networked data. However, when data is heterogeneous, most architectures are limited as they employ…

Machine Learning · Computer Science 2021-06-21 Xing Gao , Wenrui Dai , Chenglin Li , Junni Zou , Hongkai Xiong , Pascal Frossard

Constructing appropriate representations of molecules lies at the core of numerous tasks such as material science, chemistry and drug designs. Recent researches abstract molecules as attributed graphs and employ graph neural networks (GNN)…

Machine Learning · Computer Science 2021-07-29 Jianwen Chen , Shuangjia Zheng , Ying Song , Jiahua Rao , Yuedong Yang

Graph neural networks (GNNs) are designed to process data associated with graphs. They are finding an increasing range of applications; however, as with other modern machine learning techniques, their theoretical understanding is limited.…

Disordered Systems and Neural Networks · Physics 2026-02-23 O. Duranthon , L. Zdeborová

Graph neural networks (GNNs) have drawn increasing attention in recent years and achieved remarkable performance in many graph-based tasks, especially in semi-supervised learning on graphs. However, most existing GNNs are based on the…

Machine Learning · Computer Science 2024-01-24 Li Zhou , Wenyu Chen , Dingyi Zeng , Shaohuan Cheng , Wanlong Liu , Malu Zhang , Hong Qu

Graph Neural Networks (GNNs) are a framework for graph representation learning, where a model learns to generate low dimensional node embeddings that encapsulate structural and feature-related information. GNNs are usually trained in an…

Machine Learning · Computer Science 2020-12-15 Davide Buffelli , Fabio Vandin

Graph Neural Networks (GNNs) leverage the graph structure to transmit information between nodes, typically through the message-passing mechanism. While these models have found a wide variety of applications, they are known to suffer from…

Machine Learning · Computer Science 2025-10-23 Hugh Blayney , Álvaro Arroyo , Xiaowen Dong , Michael M. Bronstein

Collaborative filtering methods based on graph neural networks (GNNs) have witnessed significant success in recommender systems (RS), capitalizing on their ability to capture collaborative signals within intricate user-item relationships…

Information Retrieval · Computer Science 2024-04-16 Wei Wu , Chao Wang , Dazhong Shen , Chuan Qin , Liyi Chen , Hui Xiong

The trust in the predictions of Graph Neural Networks is limited by their opaque reasoning process. Prior methods have tried to explain graph networks via concept-based explanations extracted from the latent representations obtained after…

Machine Learning · Computer Science 2026-04-23 Lucie Charlotte Magister , Pietro Lio

Explaining graph neural networks (GNNs) has become more and more important recently. Higher-order interpretation schemes, such as GNN-LRP (layer-wise relevance propagation for GNN), emerged as powerful tools for unraveling how different…

Machine Learning · Computer Science 2026-05-22 Ping Xiong , Thomas Schnake , Grégoire Montavon , Klaus-Robert Müller , Shinichi Nakajima

Graph convolution networks have recently garnered a lot of attention for representation learning on non-Euclidean feature spaces. Recent research has focused on stacking multiple layers like in convolutional neural networks for the…

Machine Learning · Computer Science 2021-05-05 Rangan Das , Bikram Boote , Saumik Bhattacharya , Ujjwal Maulik

Graph Neural Networks (GNNs) have proven to be highly effective in various graph learning tasks. A key characteristic of GNNs is their use of a fixed number of message-passing steps for all nodes in the graph, regardless of each node's…

Machine Learning · Computer Science 2025-09-03 Yassine Abbahaddou , Fragkiskos D. Malliaros , Johannes F. Lutzeyer , Michalis Vazirgiannis

Recommendation models utilizing Graph Convolutional Networks (GCNs) have achieved state-of-the-art performance, as they can integrate both the node information and the topological structure of the user-item interaction graph. However, these…

Information Retrieval · Computer Science 2022-11-28 Xin Zhou , Donghui Lin , Yong Liu , Chunyan Miao

While message passing neural networks (MPNNs) have convincing success in a range of applications, they exhibit limitations such as the oversquashing problem and their inability to capture long-range interactions. Augmenting MPNNs with a…

Machine Learning · Computer Science 2025-04-08 Joshua Southern , Francesco Di Giovanni , Michael Bronstein , Johannes F. Lutzeyer

Message passing neural networks (MPNNs) learn the representation of graph-structured data based on graph original information, including node features and graph structures, and have shown astonishing improvement in node classification…

Machine Learning · Computer Science 2023-01-30 Xiao Liu , Lijun Zhang , Hui Guan

Graph convolutional networks (GCNs) have shown promising results in processing graph data by extracting structure-aware features. This gave rise to extensive work in geometric deep learning, focusing on designing network architectures that…

Machine Learning · Computer Science 2022-01-20 Yimeng Min , Frederik Wenkel , Guy Wolf

Graph neural networks (GNNs) are commonly divided into message-passing neural networks (MPNNs) and spectral graph neural networks, reflecting two largely separate research traditions in machine learning and signal processing. This paper…

Deep Graph Neural Networks struggle with oversmoothing. This paper introduces a novel, physics-inspired GNN model designed to mitigate this issue. Our approach integrates with existing GNN architectures, introducing an entropy-aware message…

Machine Learning · Computer Science 2024-03-08 Philipp Nazari , Oliver Lemke , Davide Guidobene , Artiom Gesp

Deep learning methods for graphs achieve remarkable performance on many node-level and graph-level prediction tasks. However, despite the proliferation of the methods and their success, prevailing Graph Neural Networks (GNNs) neglect…

Machine Learning · Computer Science 2020-11-10 Emily Alsentzer , Samuel G. Finlayson , Michelle M. Li , Marinka Zitnik

Deep graph neural networks (GNNs) often suffer from oversmoothing, where node representations become overly homogeneous with increasing depth. While techniques like normalization, residual connections, and edge dropout have been proposed to…

Machine Learning · Computer Science 2025-05-30 Jiaqi Wang , Xinyi Wu , James Cheng , Yifei Wang

Message Passing Graph Neural Networks are known to suffer from two problems that are sometimes believed to be diametrically opposed: over-squashing and over-smoothing. The former results from topological bottlenecks that hamper the…

Machine Learning · Computer Science 2024-10-31 Adarsh Jamadandi , Celia Rubio-Madrigal , Rebekka Burkholz
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