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We propose explicit symplectic integrators of molecular dynamics (MD) algorithms for rigid-body molecules in the canonical and isothermal-isobaric ensembles. We also present a symplectic algorithm in the constant normal pressure and lateral…

Statistical Mechanics · Physics 2007-05-23 Hisashi Okumura , Satoru G. Itoh , Yuko Okamoto

In this paper, we develop a framework to construct energy-preserving methods for multi-components Hamiltonian systems, combining the exponential integrator and the partitioned averaged vector field method. This leads to numerical schemes…

Numerical Analysis · Mathematics 2021-11-08 X. Gu , C. Jiang , Y. Wang , W. Cai

A new method is proposed for integrating the equations of motion of an elastic filament. In the standard finite-difference and finite-element formulations the continuum equations of motion are discretized in space and time, but it is then…

Computational Physics · Physics 2009-11-13 Anthony JC Ladd , Gaurav Misra

This paper proposes a probabilistic Bayesian formulation for system identification (ID) and estimation of nonseparable Hamiltonian systems using stochastic dynamic models. Nonseparable Hamiltonian systems arise in models from diverse…

Dynamical Systems · Mathematics 2022-09-19 Harsh Sharma , Nicholas Galioto , Alex A. Gorodetsky , Boris Kramer

This work proposes a hyper-reduction method for nonlinear parametric dynamical systems characterized by gradient fields such as Hamiltonian systems and gradient flows. The gradient structure is associated with conservation of invariants or…

Numerical Analysis · Mathematics 2023-07-24 Cecilia Pagliantini , Federico Vismara

Accurate models of robot dynamics are critical for safe and stable control and generalization to novel operational conditions. Hand-designed models, however, may be insufficiently accurate, even after careful parameter tuning. This…

Robotics · Computer Science 2021-11-29 Thai Duong , Nikolay Atanasov

In this paper, we develop a neural network-based approach for time-series prediction in unknown Hamiltonian dynamical systems. Our approach leverages a surrogate model and learns the system dynamics using generalized coordinates (positions)…

Machine Learning · Computer Science 2025-02-03 Taehyeun Kim , Tae-Geun Kim , Anouck Girard , Ilya Kolmanovsky

We develop inductive biases for the machine learning of complex physical systems based on the port-Hamiltonian formalism. To satisfy by construction the principles of thermodynamics in the learned physics (conservation of energy,…

Machine Learning · Computer Science 2023-03-28 Quercus Hernández , Alberto Badías , Francisco Chinesta , Elías Cueto

Structure-preserving approaches to dynamics discovery have demonstrated great potential for modeling physical systems due to their use of strong inductive biases, which enforce key features such as conservation laws and dissipative…

Machine Learning · Computer Science 2026-05-05 Cheng Jing , Uvini Balasuriya Mudiyanselage , Woojin Cho , Minju Jo , Anthony Gruber , Kookjin Lee

An outstanding property of any Hamiltonian system is the symplecticity of its flow, namely, the continuous trajectory preserves volume in phase space. Given a symplectic but discrete trajectory generated by a transition matrix applied at a…

Mathematical Physics · Physics 2024-08-06 Liyan Ni , Yihao Zhao , Zhonghan Hu

We derived a condition under which a coupled system consisting of two finite-dimensional Hamiltonian systems becomes a Hamiltonian system. In many cases, an industrial system can be modeled as a coupled system of some subsystems. Although…

Numerical Analysis · Mathematics 2021-12-28 Shunpei Terakawa , Takaharu Yaguchi

When numerically integrating canonical Hamiltonian systems, the long-term conservation of some of its invariants, among which the Hamiltonian function itself, assumes a central role. The classical approach to this problem has led to the…

Numerical Analysis · Mathematics 2012-06-21 Luigi Brugnano , Felice Iavernaro , Donato Trigiante

Incorporating the Hamiltonian structure of physical dynamics into deep learning models provides a powerful way to improve the interpretability and prediction accuracy. While previous works are mostly limited to the Euclidean spaces, their…

Machine Learning · Computer Science 2022-10-04 Oswin So , Gongjie Li , Evangelos A. Theodorou , Molei Tao

A complete geometric classification of symmetries of autonomous Hamiltonian mechanical systems is established; explaining how to obtain their associated conserved quantities in all cases. In particular, first we review well-known results…

Mathematical Physics · Physics 2020-10-05 N. Román-Roy

Symplectic schemes are powerful methods for numerically integrating Hamiltonian systems, and their long-term accuracy and fidelity have been proved both theoretically and numerically. However direct applications of standard symplectic…

Plasma Physics · Physics 2019-06-26 Jianyuan Xiao , Hong Qin

Though ubiquitous as first-principles models for conservative phenomena, Hamiltonian systems present numerous challenges for model reduction even in relatively simple, linear cases. Here, we present a method for the projection-based model…

Numerical Analysis · Mathematics 2024-07-12 Anthony Gruber , Irina Tezaur

The main purpose of this paper is to give a topological and symplectic classification of completely integrable Hamiltonian systems in terms of characteristic classes and other local and global invariants.

Differential Geometry · Mathematics 2007-05-23 Nguyen Tien Zung

Dynamics of a charged particle in the canonical coordinates is a Hamiltonian system, and the well-known symplectic algorithm has been regarded as the de facto method for numerical integration of Hamiltonian systems due to its long-term…

Plasma Physics · Physics 2016-07-27 Ruili Zhang , Hong Qin , Yifa Tang , Jian Liu , Yang He , Jianyuan Xiao

Physics-informed deep learning has achieved remarkable progress by embedding geometric priors, such as Hamiltonian symmetries and variational principles, into neural networks, enabling structure-preserving models that extrapolate with high…

Robotics · Computer Science 2026-03-06 Aristotelis Papatheodorou , Pranav Vaidhyanathan , Natalia Ares , Ioannis Havoutis

Accelerated gradient methods have had significant impact in machine learning -- in particular the theoretical side of machine learning -- due to their ability to achieve oracle lower bounds. But their heuristic construction has hindered…

Computation · Statistics 2018-02-16 Michael Betancourt , Michael I. Jordan , Ashia C. Wilson