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Spatial models for occupancy data are used to estimate and map the true presence of a species, which may depend on biotic and abiotic factors as well as spatial autocorrelation. Traditionally researchers have accounted for spatial…

Applications · Statistics 2021-05-05 Narmadha M. Mohankumar , Trevor J. Hefley

Spatio-temporal models are widely used in many research areas including ecology. The recent proliferation of the use of in-situ sensors in streams and rivers supports space-time water quality modelling and monitoring in near real-time. A…

Citizen science biodiversity data present great opportunities for ecology and conservation across vast spatial and temporal scales. However, the opportunistic nature of these data lacks the sampling structure required by modeling…

Machine Learning · Computer Science 2025-04-15 Nahian Ahmed , Mark Roth , Tyler A. Hallman , W. Douglas Robinson , Rebecca A. Hutchinson

Spatial designs for monitoring stream networks, especially ephemeral systems, are typically non-standard, `sparse' and can be very complex, reflecting the complexity of the ecosystem being monitored, the scale of the population, and the…

Methodology · Statistics 2008-09-12 Melissa J. Dobbie , Brent L. Henderson , Don L. Stevens

Determining spatial distributions of species and communities are key objectives of ecology and conservation. Joint species distribution models use multi-species detection-nondetection data to estimate species and community distributions.…

Applications · Statistics 2022-12-15 Jeffrey W. Doser , Andrew O. Finley , Sudipto Banerjee

Understanding the assembly of ecosystems to estimate the number of species at different spatial scales is a challenging problem. Until now, maximum entropy approaches have lacked the important feature of considering space in an explicit…

Populations and Evolution · Quantitative Biology 2014-07-10 Matteo Adorisio , Jacopo Grilli , Samir Suweis , Sandro Azaele , Jayanth R. Banavar , Amos Maritan

Understanding how habitats shape species distributions and abundances across river networks remains a longstanding and fundamental challenge in ecology, with direct implications for effective biodiversity management and conservation. We…

Methodology · Statistics 2026-05-26 Jessica P. Kunke , Julian D. Olden , Tyler H. McCormick

Predicting species distributions using occupancy models accounting for imperfect detection is now commonplace in ecology. Recently, modelling spatial and temporal autocorrelation was proposed to alleviate the lack of replication in…

Applications · Statistics 2025-10-10 André Luís Luza , Didier Alard , Frédéric Barraquand

Occupancy models are frequently used by ecologists to quantify spatial variation in species distributions while accounting for observational biases in the collection of detection-nondetection data. However, the common assumption that a…

Occupancy models are used in statistical ecology to estimate species dispersion. The two components of an occupancy model are the detection and occupancy probabilities, with the main interest being in the occupancy probabilities. We show…

Methodology · Statistics 2018-04-25 Natalie Karavarsamis , Richard M. huggins

Spatial ecological networks are widely used to model interactions between georeferenced biological entities (e.g., populations or communities). The analysis of such data often leads to a two-step approach where groups containing similar…

Applications · Statistics 2014-02-24 Vincent Miele , Franck Picard , Stéphane Dray

Conservation science depends on an accurate understanding of what's happening in a given ecosystem. How many species live there? What is the makeup of the population? How is that changing over time? Species Distribution Modeling (SDM) seeks…

Machine Learning · Computer Science 2021-07-23 Sara Beery , Elijah Cole , Joseph Parker , Pietro Perona , Kevin Winner

Obtaining reliable and precise estimates of wildlife species abundance and distribution is essential for the conservation and management of animal populations and natural reserves. Spatial capture-recapture (SCR) models provide estimates of…

Modern methods for quantifying and predicting species distribution play a crucial part in biodiversity conservation. Occupancy models are a popular choice for analyzing species occurrence data as they allow to separate the observational…

Methodology · Statistics 2024-03-19 Jafet Belmont , Sara Martino , Janine Illian , Håvard Rue

Ecological networks allow us to study the structure and function of ecosystems and gain insights on species resilience/stability. The study of this ecological networks is usually a snapshop focused in a limited specific range of space and…

Populations and Evolution · Quantitative Biology 2014-07-17 Andrzej Jarynowski , Fco. Alejandro Lopez-Nunez , Han Fan

Occupancy modeling is a common approach to assess spatial and temporal species distribution patterns, while explicitly accounting for measurement errors common in detection-nondetection data. Numerous extensions of the basic single species…

Applications · Statistics 2022-05-04 Jeffrey W. Doser , Andrew O. Finley , Marc Kéry , Elise F. Zipkin

This paper considers some designs for sampling and interventions in dynamic networks and spatial temporal settings. The sample spreads through the population largely by tracing network links, although random sampling or spatial designs may…

Methodology · Statistics 2013-06-05 Steven K. Thompson

For many taxonomic groups, online biodiversity portals used by naturalists and citizen scientists constitute the primary source of distributional information. Over the last decade, site-occupancy models have been advanced as a promising…

Accurately identifying spatial patterns of species distribution is crucial for scientific insight and societal benefit, aiding our understanding of species fluctuations. The increasing quantity and quality of ecological datasets present…

Ecosystems display a complex spatial organization. Ecologists have long tried to characterize them by looking at how different measures of biodiversity change across spatial scales. Ecological neutral theory has provided simple predictions…

Populations and Evolution · Quantitative Biology 2017-12-13 Simone Pigolotti , Massimo Cencini , Daniel Molina , Miguel A. Muñoz
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