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The problem of computing a connected network with minimum interference is a fundamental problem in wireless sensor networks. Several models of interference have been studied in the literature. The most common model is the receiver-centric,…
The mutational heterogeneity of tumours can be described with a tree representing the evolutionary history of the tumour. With noisy sequencing data there may be uncertainty in the inferred tree structure, while we may also wish to study…
We provide exact and approximation methods for solving a geometric relaxation of the Traveling Salesman Problem (TSP) that occurs in curve reconstruction: for a given set of vertices in the plane, the problem Minimum Perimeter Polygon (MPP)…
The K-way vertex cut problem} consists in, given a graph G, finding a subset of vertices of a given size, whose removal partitions G into the maximum number of connected components. This problem has many applications in several areas. It…
Roughly speaking, gerrymandering is the systematic manipulation of the boundaries of electoral districts to make a specific (political) party win as many districts as possible. While typically studied from a geographical point of view,…
A multipacking in an undirected graph $G=(V,E)$ is a set $M\subseteq V$ such that for every vertex $v\in V$ and for every integer $r\geq 1$, the ball of radius $r$ around $v$ contains at most $r$ vertices of $M$, that is, there are at most…
We define the min-min expectation selection problem (resp. max-min expectation selection problem) to be that of selecting k out of n given discrete probability distributions, to minimize (resp. maximize) the expectation of the minimum value…
Tolerance graphs model interval relations in such a way that intervals can tolerate a certain degree of overlap without being in conflict. This subclass of perfect graphs has been extensively studied, due to both its interesting structure…
The MEG (minimum equivalent graph) problem is, given a directed graph, to find a small subset of the edges that maintains all reachability relations between nodes. The problem is NP-hard. This paper gives an approximation algorithm with…
A useful approach to the mathematical analysis of large-scale biological networks is based upon their decompositions into monotone dynamical systems. This paper deals with two computational problems associated to finding decompositions…
We explore the clearing problem in the barter exchange market. The problem, described in the terminology of graph theory, is to find a set of vertex-disjoint, length-restricted cycles that maximize the total weight in a weighted digraph.…
We introduce the Red-Blue Separation problem on graphs, where we are given a graph $G=(V,E)$ whose vertices are colored either red or blue, and we want to select a (small) subset $S \subseteq V$, called red-blue separating set, such that…
The stable marriage and stable roommates problems have been extensively studied due to their high applicability in various real-world scenarios. However, it might happen that no stable solution exists, or stable solutions do not meet…
Graph similarity computation is one of the core operations in many graph-based applications, such as graph similarity search, graph database analysis, graph clustering, etc. Since computing the exact distance/similarity between two graphs…
We consider the problem of maximizing submodular functions; while this problem is known to be NP-hard, several numerically efficient local search techniques with approximation guarantees are available. In this paper, we propose a novel…
Minimum Bisection denotes the NP-hard problem to partition the vertex set of a graph into two sets of equal sizes while minimizing the width of the bisection, which is defined as the number of edges between these two sets. We first consider…
A graph $G$ realizes the degree sequence $S$ if the degrees of its vertices is $S$. Hakimi gave a necessary and sufficient condition to guarantee that there exists a connected multigraph realizing $S$. Taylor later proved that any connected…
The subset sum problem is known to be an NP-hard problem in the field of computer science with the fastest known approach having a run-time complexity of $O(2^{0.3113n})$. A modified version of this problem is known as the perfect sum…
Let $\mathcal{Q}$ be a vertex subset problem on graphs. In a reconfiguration variant of $\mathcal{Q}$ we are given a graph $G$ and two feasible solutions $S_s, S_t\subseteq V(G)$ of $\mathcal{Q}$ with $|S_s|=|S_t|=k$. The problem is to…
The congested clique model is a message-passing model of distributed computation where the underlying communication network is the complete graph of $n$ nodes. In this paper we consider the situation where the joint input to the nodes is an…