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Background: Representing biological networks as graphs is a powerful approach to reveal underlying patterns, signatures, and critical components from high-throughput biomolecular data. However, graphs do not natively capture the multi-way…

Networks are important structures used to model complex systems where interactions take place. In a basic network model, entities are represented as nodes, and interaction and relations among them are represented as edges. However, in a…

Social and Information Networks · Computer Science 2021-02-18 Mehmet Emin Aktas , Esra Akbas

Early detection of Alzheimer's disease's precursor stages is imperative for significantly enhancing patient outcomes and quality of life. This challenge is tackled through a semi-supervised multi-modal diagnosis framework. In particular, we…

Machine Learning · Computer Science 2024-03-20 Angelica I. Aviles-Rivero , Chun-Wun Cheng , Zhongying Deng , Zoe Kourtzi , Carola-Bibiane Schönlieb

Higher-order information is crucial for relational learning in many domains where relationships extend beyond pairwise interactions. Hypergraphs provide a natural framework for modeling such relationships, which has motivated recent…

Machine Learning · Computer Science 2025-02-21 Raphael Pellegrin , Lukas Fesser , Melanie Weber

In this work, we propose a novel segmental hypergraph representation to model overlapping entity mentions that are prevalent in many practical datasets. We show that our model built on top of such a new representation is able to capture…

Computation and Language · Computer Science 2018-10-04 Bailin Wang , Wei Lu

Diffusion kernels over graphs have been widely utilized as effective tools in various applications due to their ability to accurately model the flow of information through nodes and edges. However, there is a notable gap in the literature…

Numerical Analysis · Mathematics 2026-04-15 Giuseppe Alessio D'Inverno , Kylian Ajavon , Simone Brugiapaglia

Biological and cellular systems are often modeled as graphs in which vertices represent objects of interest (genes, proteins, drugs) and edges represent relational ties among these objects (binds-to, interacts-with, regulates). This…

Machine Learning · Statistics 2017-03-16 Jose Lugo-Martinez , Predrag Radivojac

We construct and study a class of spectral graph wavelets by analogy with Hermitian wavelets on the real line. We provide a localization result that significantly improves upon those previously available, enabling application to highly…

Functional Analysis · Mathematics 2020-10-05 Zach Gelbaum , Mathew Titus , James Watson

Hypergraphs, capable of representing high-order interactions via hyperedges, have become a powerful tool for modeling real-world biological and social systems. Inherent relationships within these real-world systems, such as the encoding…

Social and Information Networks · Computer Science 2025-05-09 Li Ni , Ziqi Deng , Lin Mu , Lei Zhang , Wenjian Luo , Yiwen Zhang

Networks representing social, biological, technological or other systems are often characterized by higher-order interaction involving any number of nodes. Temporal hypergraphs are given by ordered sequences of hyperedges representing sets…

Physics and Society · Physics 2026-02-27 Jürgen Lerner , Marian-Gabriel Hâncean , Matjaz Perc

The ongoing need for effective epidemic modeling has driven advancements in capturing the complex dynamics of infectious diseases. Traditional models, such as Susceptible-Infected-Recovered, and graph-based approaches often fail to account…

Social and Information Networks · Computer Science 2025-04-02 Songyuan Liu , Shengbo Gong , Tianning Feng , Zewen Liu , Max S. Y. Lau , Wei Jin

Graphs are widely used for modeling various types of interactions, such as email communications and online discussions. Many of such real-world graphs are temporal, and specifically, they grow over time with new nodes and edges. Counting…

Social and Information Networks · Computer Science 2023-01-04 Deukryeol Yoon , Dongjin Lee , Minyoung Choe , Kijung Shin

Imaging and genomic data offer distinct and rich features, and their integration can unveil new insights into the complex landscape of diseases. In this study, we present a novel approach utilizing radiogenomic data including structural MRI…

Machine Learning · Computer Science 2025-05-16 Aditya Raj , Golrokh Mirzaei

Hypergraphs are a generalization of graphs in which edges can connect any number of vertices. They allow the modeling of complex networks with higher-order interactions, and their spectral theory studies the qualitative properties that can…

Combinatorics · Mathematics 2021-12-01 Raffaella Mulas

Early diagnosis of Alzheimer's disease plays a key role in understanding the degree of the patient's mental decline and determining preventive therapies. In this study, we introduce WaveletBrain, a novel representation of the white and gray…

Image and Video Processing · Electrical Eng. & Systems 2019-07-16 Majid Masoumi , Matthew Toews , Herve Lombaert

Complex systems are often driven by higher-order interactions among multiple units, naturally represented as hypergraphs. Understanding dependency structures within these hypergraphs is crucial for understanding and predicting the behavior…

Social and Information Networks · Computer Science 2025-05-29 John Hood , Caterina De Bacco , Aaron Schein

Graph embedding techniques are useful to characterize spectral signature relations for hyperspectral images. However, such images consists of disjoint classes due to spatial details that are often ignored by existing graph computing tools.…

Computer Vision and Pattern Recognition · Computer Science 2012-11-29 Dalton Lunga 'and' Okan Ersoy

The heterogeneity of breast cancer presents considerable challenges for its early detection, prognosis, and treatment selection. Convolutional neural networks often neglect the spatial relationships within histopathological images, which…

Computer Vision and Pattern Recognition · Computer Science 2023-07-18 Akhila Krishna K , Ravi Kant Gupta , Nikhil Cherian Kurian , Pranav Jeevan , Amit Sethi

We consider a random geometric hypergraph model based on an underlying bipartite graph. Nodes and hyperedges are sampled uniformly in a domain, and a node is assigned to those hyperedges that lie with a certain radius. From a modelling…

Probability · Mathematics 2023-09-19 Henry-Louis de Kergorlay , Desmond J. Higham

Heterogeneous graph representation learning aims to learn low-dimensional vector representations of different types of entities and relations to empower downstream tasks. Existing methods either capture semantic relationships but indirectly…

Machine Learning · Computer Science 2025-08-14 Hao Xu , Shengqi Sang , Peizhen Bai , Laurence Yang , Haiping Lu